FMO02169.5prime Sequence
1198 bp (997 high quality bases) assembled on 2008-05-06
> FMO02169.5prime
CAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCATCAATTCG
GCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTGCCGGACGA
CGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCAGTACAGAG
GCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGTCCCTGCAG
AACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGGATGCACCA
GAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCAGATCGTCA
ATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGGACACCGAC
CAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCGCTCCTGGA
CGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGATGAGGGAGC
AGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAAACGGCCTG
CTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGTGGTGTTGT
GCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTCAACGCCCA
ACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCGGCTCCAAT
GGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACAGGTAGCAA
GCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAGCTCTCTGG
AGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTGGCAGTGGT
GGTGGCAGTGGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGTGGAGCGG
GACACGGACGAAAGGGCCAGTCTGCAGTCGGCTTCTGGCAGTTTGGCTAG
CGGCTCTGCAGCCACGAGCAGTGTAGCAGCCGGAGGTGGTGGTGCCAGCG
AGCCGGCGTAGTGGTGGCATATTCGCAAGAAGAAAAAGCGCAAGGTACGC
GGTCTGGGGCTTCAATGCCAATGCCCAGTACGCGAAGAGGAGACGCCGCC
GCGGAAAACCATGATCGACGAGCGACTACTGGGTCTGCATCGAATTCCCT
TTGGCGAATGATCAGGGCGACAATGAACCTTGCCATCGAGGTGTCATTTC
GCGTGCTCTCCCTGTATCTAACCAAAAGCAAGGTGTTTCTGCCCCACA
FMO02169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7379-RA | 1787 | CG7379-RA | 196..1402 | 9..1196 | 5045 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17796971..17797888 | 1062..149 | 3990 | 98 | Minus |
| 3R | 32079331 | 3R | 17797967..17798109 | 151..9 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:31 has no hits.
FMO02169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:56 Download gff for
FMO02169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 209..1279 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:58 Download gff for
FMO02169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 188..1258 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:53 Download gff for
FMO02169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 188..1258 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:53 Download gff for
FMO02169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17796966..17797886 | 151..1066 | 98 | <- | Minus |
| 3R | 17797968..17798113 | 1..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:58 Download gff for
FMO02169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13622688..13623608 | 151..1066 | 98 | <- | Minus |
| arm_3R | 13623690..13623835 | 1..150 | 97 | | Minus |
