FMO02170.5prime Sequence
1211 bp (1026 high quality bases) assembled on 2008-05-06
> FMO02170.5prime
CAGTCGACATGACCCAACAGAGGCCAGCTTTCGACTCCAATGCGATGACG
CTGACGCGTTTCGTGCTGCAGGAGCAGCGAAAGTTCAAGAGCGCCACTGG
CGATCTCTCCCAGCTGCTCAACTCCATCCAGACCGCCATCAAGGCTACAT
CATCCGCGGTGCGGAAGGCAGGTATCGCCAAGCTCCATGGATTCGCTGGC
GACGTGAATGTCCAAGGCGAGGAGGTCAAGAAACTGGACGTGCTCTCCAA
CGAGCTGTTCATCAACATGCTGAAGTCATCCTATACCACATGTCTAATGG
TTTCCGAGGAGAACGAGAATGTGATCGAGGTGGAAGTGGAGAAACAGGGC
AAATACATCGTGTGCTTCGATCCCTTGGATGGATCCTCCAACATAGACTG
CCTGGTGTCGATCGGTTCAATCTTCGCCATTTACCGCAAGAAAAGCGATG
GTCCGCCCACAGTGGAGGATGCACTGCAGCCCGGAAATCAGCTGGTGGCC
GCCGGCTACGCGCTATACGGTTCGGCCACAGCAATTGTCCTGGGTCTGGG
TTCGGGAGTGAATGGCTTCACTTATGACCCGGCCATCGGAGAGTTCGTGC
TGACCGATCCCAACATGCGGGTGCCGGAGAAGGGAAAGATATACTCTATC
AACGAGGGATATGCAGCGGATTGGGAGGATGGTGTCTTCAACTACATTGC
GGCCAAGAAGGATCCCGCCAAGGGAAAGCCCTATGGAGCGCGGTACGTGG
GTTCCATGGTCGCGGATGTGCATCGCACCATTAAATACGGCGGCATCTTT
ATCTATCCGGCAACAAAGTCCGCTCCCAGCGGAAAACTTCGTCTGCTGTA
CGAGTGCGTGCCCATGGCCTATCTGATGATCCAGGCTGGAGGTCTGGCCA
GCGACGGAAAGATCAGCATTTTGGACATTGTGCCCAGAAGATCCACGAGC
GCAGTCCCATATTCCTAGATCCAAGTCCGACGTGAGAGCACTTAGCTACT
TTAGCAAGCTTTCTAGACCATTCGTTGGCGCGCGGCCCAGGTAGTGTCAT
TATCATATCATATCATATCATATTCACACTAGCTAGAGATCCTGTCATGA
CTAGGCTGATTCTCCCAATAAAAACGCCGGGCGCACCGAAGTTCTGACCA
TTCGAATGGATTCTGAGCCATTACTGGACTCTATCACAGAGGAGTCACAG
CGAGAACTACT
FMO02170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbp-RE | 1202 | CG31692-RE | 145..1142 | 9..1001 | 4865 | 99.5 | Plus |
| fbp-RA | 1130 | CG31692-RA | 73..1070 | 9..1001 | 4865 | 99.5 | Plus |
| fbp-RD | 1185 | CG31692-RD | 140..1125 | 21..1001 | 4805 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19761667..19762308 | 984..345 | 3110 | 99.7 | Minus |
| 2L | 23513712 | 2L | 19762487..19762826 | 348..9 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:43 has no hits.
FMO02170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:42 Download gff for
FMO02170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31692-RB | 143..1144 | 9..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:39 Download gff for
FMO02170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RA | 73..1074 | 9..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:53 Download gff for
FMO02170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RA | 73..1074 | 9..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:53 Download gff for
FMO02170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19761643..19762305 | 348..1008 | 98 | <- | Minus |
| 2L | 19762488..19762833 | 1..347 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:39 Download gff for
FMO02170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19761643..19762305 | 348..1008 | 98 | <- | Minus |
| arm_2L | 19762488..19762833 | 1..347 | 98 | | Minus |
