FMO02171.5prime Sequence
488 bp (488 high quality bases) assembled on 2008-05-06
> FMO02171.5prime
CAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGCGATCGCAG
CTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAAAATGTCGT
TGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAAGAAGGATG
TCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCGATGTGATG
AAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGACGCCAAGTT
CAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCTGGCCACCG
AGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGAAGAATACG
GACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCATTGCTCCAT
GCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAAGGTCAAGC
AGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACCAT
FMO02171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9836-RA | 955 | CG9836-RA | 107..568 | 9..470 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8823427..8823801 | 470..96 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 8823983..8824071 | 97..9 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:56 has no hits.
FMO02171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:43 Download gff for
FMO02171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9836-RA | 103..564 | 9..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:16 Download gff for
FMO02171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9836-RA | 107..568 | 9..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:25 Download gff for
FMO02171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9836-RA | 107..568 | 9..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:25 Download gff for
FMO02171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8823427..8823801 | 96..470 | 100 | <- | Minus |
| 3R | 8823985..8824071 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:16 Download gff for
FMO02171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4649149..4649523 | 96..470 | 100 | <- | Minus |
| arm_3R | 4649707..4649793 | 9..95 | 100 | | Minus |
