FMO02174.5prime Sequence
1217 bp (1061 high quality bases) assembled on 2008-05-06
> FMO02174.5prime
CAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCATTGAGATC
ACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGCTGCGACTG
GGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGCGGACCTGC
CGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAACCAAAGCCG
ACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGGGCCACCAA
GAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGACATCGCCC
CGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCGACATGTCG
AAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCCGGCGGCTC
AGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAAGAACTTCC
GGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAAACATCGCA
GAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGATCTGGCGG
TGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAATGACCACA
CGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACAAGCCGGTG
GTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGCGGTGAGCT
TCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGACTGTCATGC
GCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGGTCAATGTG
GATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCAGTTCCGCA
GACTTTTAAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGCCAATTTG
GGTCACGGAAGCGCCAACAGTTCCAGTGGCATTGTCGCCCGGTGAGGCTG
CAAACCAGAAGCTAGTGCCCGTGATGCCATTAACTTAAATTCCGAAGCAC
CGTCACTACGCTGCAGAATTCGCCTAGCGGACGGTTCGGCGTCTAGCTGG
CCCAGTTTAATCTTCGCACACGTCCTCGAAATCGTCGATCATACAAACCT
GCACGCCCTCAGTACTCAACTAATAACTCCATCTGGGGTGTCCTCGTTCC
CCACTCGCGGAGACTGAGCGCACGAACAATTCACACATCGGAAAAGAGCT
GTGTCCTCTCAAGAAAA
FMO02174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p47-RA | 1432 | CG11139-RA | 90..1258 | 9..1182 | 5310 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7465778..7466207 | 755..326 | 2150 | 100 | Minus |
2R | 25286936 | 2R | 7465369..7465676 | 1064..754 | 1185 | 97.1 | Minus |
2R | 25286936 | 2R | 7466263..7466479 | 325..109 | 1085 | 100 | Minus |
2R | 25286936 | 2R | 7466569..7466670 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:24 has no hits.
FMO02174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:01 Download gff for
FMO02174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11139-RA | 54..1242 | 1..1193 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:40 Download gff for
FMO02174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p47-RA | 82..1270 | 1..1193 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:00 Download gff for
FMO02174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p47-RA | 82..1270 | 1..1193 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:00 Download gff for
FMO02174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7466263..7466477 | 111..325 | 100 | <- | Minus |
2R | 7466569..7466678 | 1..110 | 96 | | Minus |
2R | 7465331..7465675 | 755..1099 | 94 | <- | Minus |
2R | 7465779..7466207 | 326..754 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:40 Download gff for
FMO02174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3353768..3353982 | 111..325 | 100 | <- | Minus |
arm_2R | 3354074..3354183 | 1..110 | 96 | | Minus |
arm_2R | 3352836..3353180 | 755..1099 | 94 | <- | Minus |
arm_2R | 3353284..3353712 | 326..754 | 100 | <- | Minus |