FMO02175.5prime Sequence
653 bp (653 high quality bases) assembled on 2008-05-06
> FMO02175.5prime
CAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCCGCACCCTC
AGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAGGTGTTCGG
TCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTCCAAGTTGA
GCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGGCCACCATC
CGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATCATCAACAA
GAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCTCCGCTTCG
CCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACGGACGTCTA
AAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATGGCCGCACA
TCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTTGGATGCGT
CCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGAAGGGCAAC
GAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATTGGTGGCCT
GATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGCCACTAAGG
TCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCTTTCTAGAC
CAT
FMO02175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oscp-RA | 802 | CG4307-RA | 71..697 | 9..635 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15265926..15266370 | 38..482 | 2225 | 100 | Plus |
| 3R | 32079331 | 3R | 15266431..15266585 | 481..635 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:13 has no hits.
FMO02175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:03 Download gff for
FMO02175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4307-RA | 86..712 | 9..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:48 Download gff for
FMO02175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RA | 71..697 | 9..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:24 Download gff for
FMO02175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RA | 71..697 | 9..635 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:24 Download gff for
FMO02175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15265661..15265690 | 9..38 | 100 | -> | Plus |
| 3R | 15265927..15266370 | 39..482 | 100 | -> | Plus |
| 3R | 15266433..15266585 | 483..635 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:48 Download gff for
FMO02175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11091383..11091412 | 9..38 | 100 | -> | Plus |
| arm_3R | 11091649..11092092 | 39..482 | 100 | -> | Plus |
| arm_3R | 11092155..11092307 | 483..635 | 100 | | Plus |
