FMO02176.5prime Sequence
707 bp (707 high quality bases) assembled on 2008-05-06
> FMO02176.5prime
CAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGTACGGCCTA
CTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTCTTCTCCTG
TGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAGCTATGGGT
CGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGGGCATGTAC
GTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTAATTTGCAG
TGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTTCACGGCGA
TGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCGACCTCTTC
GAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCACAGCCTCTT
CGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGAGGAGCACG
GCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCAAGCCGGCG
CACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACTCTGAGAAT
GCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGCCCTCGAGT
TTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCAAGTATGCC
AAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACGCAAGCTTTCT
AGACCAT
FMO02176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1023 | 7..689 | 3415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 237..599 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 7041568..7041730 | 74..236 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7042578..7042669 | 598..689 | 460 | 100 | Plus |
2R | 25286936 | 2R | 7040476..7040543 | 7..74 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:53 has no hits.
FMO02176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:04 Download gff for
FMO02176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-RA | 332..1020 | 1..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:11 Download gff for
FMO02176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 335..1023 | 1..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:56 Download gff for
FMO02176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 335..1023 | 1..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:56 Download gff for
FMO02176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7040470..7040543 | 1..74 | 94 | -> | Plus |
2R | 7041569..7041730 | 75..236 | 100 | -> | Plus |
2R | 7041785..7042147 | 237..599 | 100 | -> | Plus |
2R | 7042580..7042669 | 600..689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:11 Download gff for
FMO02176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2927975..2928048 | 1..74 | 94 | -> | Plus |
arm_2R | 2929074..2929235 | 75..236 | 100 | -> | Plus |
arm_2R | 2929290..2929652 | 237..599 | 100 | -> | Plus |
arm_2R | 2930085..2930174 | 600..689 | 100 | | Plus |