FMO02178.5prime Sequence
1194 bp (1021 high quality bases) assembled on 2008-05-06
> FMO02178.5prime
CAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGATGGTCGTG
ACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTGCTCGGCCA
GGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGATCGCGCCCT
GCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCGAGACCACC
GATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGCAAGAGTCC
CATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAAGCTGCAGG
GCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCCACAACAGC
AGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGAGCGGGACT
GACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCCCTCGCAGG
CTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACCACAATAAA
ATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACCCTGGAGAT
TCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGAGGCTTTCC
GAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCAACGATCTT
ACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTAAAGAAACT
GGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGATTTCGAAG
GCTTGCAGAGCCTGACTCATTGATTTTGGCCCACAACATGATCACCACCG
TGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAACTCCTTGGAGCTGG
AGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAAGGTCCTAGAG
GAGAACCTGCATATCTGCGCCTGGGTGAAACCAGATCCACACTATTCCAG
CGAGGCACTGCGTCGCTGCACCGCTTCGCCACTTGGACTTGCGCACACAA
TATCATGTTTGGCTGAGATGCCTTCACTGGCTTTGGAGAATTCCTGACTT
CCTCAACCTGCAGAGACGACGTCAAGTCTGCCATCTTCTGTTTTGAACCT
CAACTCGCTTGGAAGCTGACTGAAAAACAAGTGCACGCATCGCCAGACTT
ATGGAACCGCTATCGAACCCTATCGATACTTTCGATTTCTACCA
FMO02178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 3801 | CG14762-RB | 836..1957 | 8..1109 | 5045 | 97.8 | Plus |
| CG14762-RA | 3658 | CG14762-RA | 836..1957 | 8..1109 | 5045 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 391..8 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 613..390 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 751..614 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 8011643..8011797 | 901..749 | 660 | 98.1 | Minus |
| 2R | 25286936 | 2R | 8011408..8011582 | 1064..901 | 320 | 90.9 | Minus |
Blast to na_te.dros performed 2014-11-28 22:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tc1-2 | 1644 | Tc1-2 TC1-2 1644bp | 934..975 | 1001..1042 | 111 | 73.8 | Plus |
FMO02178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:06 Download gff for
FMO02178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 832..1968 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:30 Download gff for
FMO02178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1969 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:46 Download gff for
FMO02178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1969 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:46 Download gff for
FMO02178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8011643..8011795 | 751..901 | 98 | <- | Minus |
| 2R | 8011866..8012002 | 614..750 | 100 | <- | Minus |
| 2R | 8012060..8012282 | 391..613 | 100 | <- | Minus |
| 2R | 8012347..8012732 | 1..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:30 Download gff for
FMO02178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3899148..3899300 | 751..901 | 98 | <- | Minus |
| arm_2R | 3899371..3899507 | 614..750 | 100 | <- | Minus |
| arm_2R | 3899565..3899787 | 391..613 | 100 | <- | Minus |
| arm_2R | 3899852..3900237 | 1..390 | 98 | | Minus |
