FMO02179.5prime Sequence
829 bp (829 high quality bases) assembled on 2008-05-06
> FMO02179.5prime
CAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACACTGCTCCC
AGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGTCCCATTGT
CCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACACGATCGCC
ACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGTCCAAGCGT
ATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAATAAGGAGAA
GGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGCGGTTAACT
TTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACCAGTTCCGC
AGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTACACCTACAT
GGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAACCAAGAGCG
TTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCGAGGAGAGC
AGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAGGCTATAGC
TCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCCCACGGAAT
ATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCCGCTGCATA
AATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACCTGCAAGGC
CCTGCAGCATTTCTACAGCGGGTTGGTTAGTTCTCCCTTAAGAAACTCAA
TTAACTTCCTATTGTTTTCAGTTACATCAGTCGCAAGCTTTCTAGACCAT
TCGTTTGCGCGCGGGCCCAGGTAAGTGGT
FMO02179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..907 | 9..782 | 3870 | 100 | Plus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 9..721 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362598 | 9..782 | 3870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:12 has no hits.
FMO02179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:08 Download gff for
FMO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5063-RA | 97..887 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:17 Download gff for
FMO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 129..919 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:01 Download gff for
FMO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 129..919 | 1..796 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:01 Download gff for
FMO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361820..15362610 | 1..796 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:17 Download gff for
FMO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187542..11188332 | 1..796 | 98 | | Plus |
