FMO02180.5prime Sequence
1196 bp (1015 high quality bases) assembled on 2008-05-06
> FMO02180.5prime
CAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGGCGGCCGCA
GTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTTTCCACGGC
CTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGGTTGGTTGG
AGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGGATTTTGGA
TGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAACCCATCGA
GAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGAGCGACGCG
CCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCAAGGATGAG
GAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCCAATAGCTG
TGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGAGAACAATC
TTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCAAAGGCATG
AGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAGCTGGCCTG
TGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCTAGAAAGGA
CGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGTTTCACTTC
GTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGATGGCTTGAA
ACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGATTGGACAG
ATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGACCGGCGAA
CAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGGCGGATTGC
CATAACACATAAACTTAAGATGCTGCGCACAAACCAGGCAATCGTGTCCG
GAACACTGCAGAAACTTCTAAGGCCGACGAGCAGGCGAATCGGGGACGGA
GACTCACACGTCCGATAACTCACCACATATGAGCGAGCGCTTCACCGCAC
GTGACTGCATCGCTTCTCAGACTGAAACAAAAATAGCATCATGACAGCAT
CTGCTGACGAAAACGATCGAGCACATGTTAGGTGGACGCCATCGACGTAC
CAACTACGAATAAGGTCATTGCCTTCCTCTCTATGCTGCCACAGGCCTGG
ACGACTGTAGCCAGCATTGTCTTCGTCAAAAGAATAGGTCAATGTG
FMO02180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| calypso-RA | 2147 | CG8445-RA | 359..1519 | 9..1138 | 4975 | 96.8 | Plus |
| calypso-RB | 2117 | CG8445-RB | 329..1489 | 9..1138 | 4975 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16194898..16195657 | 958..202 | 3650 | 99.6 | Minus |
| 2R | 25286936 | 2R | 16195715..16195909 | 203..9 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:12 has no hits.
FMO02180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:09 Download gff for
FMO02180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8445-RB | 298..1468 | 9..1150 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:54 Download gff for
FMO02180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| calypso-RB | 329..1499 | 9..1150 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:12 Download gff for
FMO02180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| calypso-RB | 329..1499 | 9..1150 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:12 Download gff for
FMO02180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16194680..16195657 | 202..1150 | 95 | <- | Minus |
| 2R | 16195717..16195909 | 9..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:54 Download gff for
FMO02180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12082185..12083162 | 202..1150 | 95 | <- | Minus |
| arm_2R | 12083222..12083414 | 9..201 | 100 | | Minus |
