FMO02182.5prime Sequence
1198 bp (1023 high quality bases) assembled on 2008-05-06
> FMO02182.5prime
CAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCACCCGCATG
AGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCCGCCGCCGG
ATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGGCGCCCACA
ACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCGTGTTTGTC
TGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCCTACTCGGC
GGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACTCACAGCAC
AGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGGATGTCCTT
GGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGACAAGGTGCT
GCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAAGTTGGCCC
GCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGGCAAAGATC
ATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCGGTGTCCGC
CTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCATGCCCGGAT
TCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGTCCCTCAAG
GATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGAGAGGCTGG
CGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGAGCTCTGCA
CCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAGGATTGGCC
AGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAGCCAGACAT
TCTGATCCTGGGAAAGCACTGTCCGGAGGAATGTATCCCGTGTCGGCGGT
TCTTCTGCAACGACCAGGTGATGCTGTGCATCAAGCCGGGCGAGCACGGA
TCCACCTACGGAGGCAACCCCTGGGCTGCCGAGTGACCATGCCGCTTTGA
AGTTCTGCAGAGAAAAGCTGGCGAACGCTTCAATGGGTGACCTGCTGCCC
ACGGCTGTCACGCTGCCAAGATGTGGGTCCGTGGTGCCGAAGGGTCTGCC
TCACCCCATCGTTATTAACAAAGTTCAGGCTGGAGGTGCTTAGCTAAGGA
AACGGAACTCCTGTCAGCACACCATGGGGACATTATTTCCTCTGCCAA
FMO02182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-RA | 1501 | CG8782-RA | 90..1222 | 7..1119 | 5010 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19647762..19648426 | 991..328 | 3165 | 99.4 | Minus |
| 3L | 28110227 | 3L | 19649441..19649762 | 328..7 | 1610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:10 has no hits.
FMO02182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:58 Download gff for
FMO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8782-RA | 83..1140 | 1..1048 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:21 Download gff for
FMO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 85..1142 | 1..1048 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:31 Download gff for
FMO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 85..1142 | 1..1048 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:31 Download gff for
FMO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19647695..19648425 | 329..1048 | 97 | <- | Minus |
| 3L | 19649441..19649767 | 1..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:21 Download gff for
FMO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19640795..19641525 | 329..1048 | 97 | <- | Minus |
| arm_3L | 19642541..19642867 | 1..328 | 99 | | Minus |
