FMO02183.5prime Sequence
1190 bp (1010 high quality bases) assembled on 2008-05-06
> FMO02183.5prime
CAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGCAGCGACTG
GGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTAATATCCGC
CCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGACAGTCAGT
CCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTGATGGAGCC
CGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACTTACCGATA
TAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCTTCATCCGG
CGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCGCCACACTT
ATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAGAAGACCGT
ACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGACCAATCGC
TGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCCGCGCCTCT
GCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCCACACGTGG
AAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTATATACCTGC
TGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTATATTCGGA
GCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTATCCGTTGCT
ATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGACACAAACTC
CCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAACAACTGTGC
CTGATAAGTGGAACATTGATCAGCCTAGTGGCCCTTCACTTGGACCTTCT
ACACAATGTACGGGTTGGGAATATATATATGAAGCGTACCTGTACCACTT
CGTACGCAAGGACCCGCGACACAACTTCTCGCTGCAGTTCCTTCTACAGT
ACTGGCAGTGCGTCGAGTGTGCGGATCTTCTGCGATCCTGAGACTCTGTG
CTGCTCGCAGTTCTGCTCATCCTCTACTTAAGCTTGAGCTTCGTCAGGTC
CGCCAGACGCTGCAATTCTGCATGTGCGTGACCTTGCATCGTCACCTATT
AACTCGAGTACTCTCAGAACTCATTGCAACTTGCATTCGCGCCTGATAGA
TCACTCAAGTCGTCAGGAAAGGGCTTCGACTCCGGTACTC
FMO02183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42381-RA | 2259 | CG42381-RA | 812..1921 | 9..1106 | 5050 | 97.9 | Plus |
| CG42380-RB | 2320 | CG42380-RB | 873..1982 | 9..1106 | 5050 | 97.9 | Plus |
| CG42380-RA | 2259 | CG42380-RA | 812..1921 | 9..1106 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21667916..21668988 | 1073..9 | 4760 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:47 has no hits.
FMO02183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:07:59 Download gff for
FMO02183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-RB | 868..1983 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:09 Download gff for
FMO02183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1923 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:52 Download gff for
FMO02183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1923 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:52 Download gff for
FMO02183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21667877..21668992 | 1..1109 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:09 Download gff for
FMO02183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17555382..17556497 | 1..1109 | 97 | | Minus |
