FMO02189.5prime Sequence
989 bp (989 high quality bases) assembled on 2008-05-06
> FMO02189.5prime
CAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACATCAAGCGC
CGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGCGAACGGGA
GGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGACGACCAAG
ACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCAAGAGCCGA
TGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCGGGAAACTT
TGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAACAGATCCCG
CGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGCTGAGCGAG
GAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTGCTGTATCA
GGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCGTGGCGGTA
AATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCGGGACGTGG
GAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTATGGGCAAA
CGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGACTTTCTGC
CCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGAAGAAGAAC
AACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTAAAGGAGGA
CAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGAGGGGCAGG
GCTTAGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACAAGGCACCGC
AACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCCCAGCCAGAG
GACTGCGACAATGAATATGACGCCTACAGGAAGCGAATGATGTTGGCCTA
TCGTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCTACTACGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGGTAGT
FMO02189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-RD | 2700 | CG31550-RD | 1661..2601 | 7..946 | 4680 | 99.9 | Plus |
| CG31550-RC | 2573 | CG31550-RC | 1534..2474 | 7..946 | 4680 | 99.9 | Plus |
| CG31550-RA | 1849 | CG31550-RA | 810..1750 | 7..946 | 4680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5488532..5489091 | 235..793 | 2750 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5488080..5488308 | 7..235 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 5489139..5489273 | 788..922 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:43 has no hits.
FMO02189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:17 Download gff for
FMO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RC | 1540..2489 | 1..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:03 Download gff for
FMO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RA | 805..1754 | 1..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:33 Download gff for
FMO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RA | 805..1754 | 1..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:33 Download gff for
FMO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5488075..5488307 | 1..234 | 98 | -> | Plus |
| 3R | 5488532..5489090 | 235..792 | 99 | -> | Plus |
| 3R | 5489144..5489273 | 793..922 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:03 Download gff for
FMO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1313797..1314029 | 1..234 | 98 | -> | Plus |
| arm_3R | 1314254..1314812 | 235..792 | 99 | -> | Plus |
| arm_3R | 1314866..1314995 | 793..922 | 100 | -> | Plus |
