FMO02193.5prime Sequence
1214 bp (1029 high quality bases) assembled on 2008-05-06
> FMO02193.5prime
CAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAAATGTTTTC
TCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCCAACCTGGC
CTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGATCAACGAAT
CCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAACGCCTCTCC
CAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTGACCGTCCT
GGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCTGGTGGCCC
AGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCAAGAACGAT
CCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAAATCTGGGC
GGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCAGATGTACA
TGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATCTGGATGCC
ATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATGCCCCCTCA
GCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACATGGCTGCCG
CTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAGGTCCTTTG
CATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTGGAGATCGT
TAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCTGAAGCCCG
GCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCACCTCGACC
TGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGTGTCCAGGA
CGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCTGAACAATG
TGTTCTTGCCCCACCAGCGTTACGAAAAAAATCGTTCGCAGGGCAGGGTG
CTGGTGTTACTCGCCCCTCGGCTGTGCTGGGCGCAGCCATGGGCCTGCCC
GTGTGGGGAACAGCTGGAGCAGGAGCCACCACGGTGGCTACGCTACCACC
TCGCCCACAACTTACCGCCGTGGAGCCAATACGCCGCAAGTGACCAACTG
CTGATCGAATCTATCGAAGCAGCGAGAAAGCCCAACTGCCAGAGTTGACA
ATCGCCTGGAGTGTGAACCCCATGGGGGTGCAAAAGAGAAGCAGCCAAGA
ACTGTGCGTAGTGT
FMO02193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3529-RD | 2111 | CG3529-RD | 133..1266 | 9..1141 | 5315 | 98.5 | Plus |
| CG3529-RC | 2069 | CG3529-RC | 133..1266 | 9..1141 | 5315 | 98.5 | Plus |
| CG3529-RB | 2120 | CG3529-RB | 133..1266 | 9..1141 | 5315 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9448900..9449515 | 527..1141 | 2510 | 96 | Plus |
| 3L | 28110227 | 3L | 9448386..9448839 | 74..527 | 2270 | 100 | Plus |
| 3L | 28110227 | 3L | 9446996..9447062 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:24 has no hits.
FMO02193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:23 Download gff for
FMO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 115..1258 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:55 Download gff for
FMO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 126..1269 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:29 Download gff for
FMO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 126..1269 | 1..1144 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:29 Download gff for
FMO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9446989..9447062 | 1..75 | 94 | -> | Plus |
| 3L | 9448388..9448839 | 76..527 | 100 | -> | Plus |
| 3L | 9448901..9449519 | 528..1144 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:55 Download gff for
FMO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9440089..9440162 | 1..75 | 94 | -> | Plus |
| arm_3L | 9441488..9441939 | 76..527 | 100 | -> | Plus |
| arm_3L | 9442001..9442619 | 528..1144 | 96 | -> | Plus |
