FMO02194.5prime Sequence
1220 bp (1038 high quality bases) assembled on 2008-05-06
> FMO02194.5prime
CAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGAACGGAACA
ACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAGGATGCCAA
GGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAAATTGCCCG
TGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCAAAGTAAAA
GGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAGGATTGTGT
GACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACTGGACCGAC
CCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATAAGCTTGAG
GTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTACAACCAGGC
CAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCGCGTCGTCA
AGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGGATCTCGCC
TGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGTCTGGCTGT
CAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCTTGAATACT
ACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATGATAAACAA
AATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATGCCAGTTCC
CGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGGACGGCTAT
CCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGACAGATCAAG
CAGGTCCAGAAAGGGCAACATCAACGACTATCTGAGCTCCCTGATAGCCG
CCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGATGGGCACG
AATGGGGGAGCAGTCTGGGTGGCAGCAGCAGTGACGCCTGTTCGCCATTT
GGAACCACCACTAGCACCACTACCACACTACCACCAGCTCCACAGCACAA
CAGCCCGTGTGCCTTGCCACATGGTGGCCAAAGCAACGGCGCCGGCGGTG
TCGTCTCAGCAAGCTTTCTAGAACATCGATGGGCGCGCGGGCCCAGGTAT
GGTCAAATCAAACATATCATAATCAAAATCACACTAGCCTAGGAATCTGC
TATGAACATGGGCTTGAATCCCACAATAAAAACGGCCCGCGGGGGGGGAC
ACCGCGGAGCGGGTACTCGT
FMO02194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-2-RA | 2148 | CG9057-RA | 280..1336 | 8..1059 | 4965 | 98.7 | Plus |
| Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 8..691 | 3420 | 100 | Plus |
| Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 8..691 | 3420 | 100 | Plus |
| Lsd-2-RF | 4598 | CG9057-RF | 1145..1518 | 691..1059 | 1550 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15073933..15074376 | 643..200 | 2205 | 99.8 | Minus |
| X | 23542271 | X | 15072348..15072648 | 993..691 | 1305 | 98.4 | Minus |
| X | 23542271 | X | 15075747..15075941 | 202..8 | 975 | 100 | Minus |
| X | 23542271 | X | 15073341..15073392 | 690..639 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:05 has no hits.
FMO02194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:11 Download gff for
FMO02194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9057-RA | 256..1319 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:13 Download gff for
FMO02194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 273..1336 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:56 Download gff for
FMO02194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 273..1336 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:56 Download gff for
FMO02194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15075748..15075946 | 1..201 | 98 | | Minus |
| X | 15073937..15074374 | 202..639 | 100 | <- | Minus |
| X | 15072275..15072648 | 691..1059 | 96 | <- | Minus |
| X | 15073341..15073391 | 640..690 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:13 Download gff for
FMO02194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14969781..14969979 | 1..201 | 98 | | Minus |
| arm_X | 14966308..14966681 | 691..1059 | 96 | <- | Minus |
| arm_X | 14967374..14967424 | 640..690 | 100 | <- | Minus |
| arm_X | 14967970..14968407 | 202..639 | 100 | <- | Minus |
