FMO02195.5prime Sequence
793 bp (792 high quality bases) assembled on 2008-05-06
> FMO02195.5prime
CAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCGCGCCACAT
GCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCA
AAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACC
ACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTC
GGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAA
TGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACG
ATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTT
AACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAA
CTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCG
ACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATC
AAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCT
GCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGC
TGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCG
TGCAAGATCCTGAAAGGCGGCCTGCAGAGGTTGCCGATCAGCTGGAACTG
CGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGG
CATGGCTTCTTTCAAATGCGTTGAGATGTTCTTCGAGGACCAC
FMO02195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pop2-RA | 1688 | CG5684-RA | 322..1104 | 9..790 | 3800 | 99.2 | Plus |
| Pop2-RB | 1893 | CG5684-RB | 536..1309 | 18..790 | 3755 | 99.2 | Plus |
| Pop2-RC | 1827 | CG5684-RC | 470..1243 | 18..790 | 3755 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12000282..12000692 | 766..357 | 1945 | 98.8 | Minus |
| 3L | 28110227 | 3L | 12000750..12001091 | 358..17 | 1710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:04 has no hits.
FMO02195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:24 Download gff for
FMO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5684-RA | 320..1105 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:15 Download gff for
FMO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 322..1107 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:02 Download gff for
FMO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 322..1107 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:02 Download gff for
FMO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11998979..11998996 | 776..793 | 94 | <- | Minus |
| 3L | 12000273..12000690 | 359..775 | 98 | <- | Minus |
| 3L | 12000750..12001091 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:15 Download gff for
FMO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11992079..11992096 | 776..793 | 94 | <- | Minus |
| arm_3L | 11993373..11993790 | 359..775 | 98 | <- | Minus |
| arm_3L | 11993850..11994191 | 17..358 | 100 | | Minus |
