FMO02196.5prime Sequence
1220 bp (961 high quality bases) assembled on 2008-05-06
> FMO02196.5prime
CAGTCGACATGTACAGGTCTCTGCTGCACAACGTTTCACTCAAGGCGACA
TCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCAAAAGGAGCCAGCGG
AAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAGCCACGATCGGAATA
GACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTCGAGACCCGCACAAG
TGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTGGCCCAGGATCTGCT
TCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCATGAGTTCCTCAGCT
GGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGCTCAAACTGGATCCG
GACATACTGTGCCTGCAGGAGATGCAGTTCGACCACCTTCCAGTGCTCGT
CCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGCTTATGTGTACAAAA
AGAAGACCGGCTGTCGAACGGACGGATGCGCTATTGTCTACGACTCCTCA
AAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTGTACGACCAGGCGGT
GGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGCCAGGTTCCGATTCA
AAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCGCCACCACGCACTTG
CTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCCCAGGTGGAAAGAAT
TTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACCTATCGTCCTGACTG
GTGACTTTAACAGTCTGCCGACTCCTCGCCTATTGAATTCCTCGTTGGCA
AGAATGGGGATGTGGATTCCACAGCTTGCCCAGAACCCCTGCATTTCGAG
ATCATCGATTCGGGCGAAGGTACTGCCTCCACATACCAAACGATGGGTTA
TCGTGGACTACATCCTGCCGCTCGCTAGGATCGCGAAGCAAGCAACAAGC
CTCTTGCCTCTCACGTCTACTCCACTGCCCTCAATCAACCGGGTGCATCG
GGGCGGGAACAGATCCCCAATTACCGTCTGGGGTCGGATCACTACGCCTT
GGGTGCAGTTTCACCGATGTCGCAAGCTTTCTAAGAACATCGTTTGGCGC
GGCGGCCAGTAGTGGTCATAATCTTAAATCATATCTAAAATCTAATTCCC
ACTATGTCTAGACATTCTCTGCTGTGAACTAGTGCGTGGCATCTCTCCAC
AATAAAAAAAGTCTCCGATA
FMO02196.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 116..1177 | 9..1071 | 5020 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694118..23695166 | 9..1059 | 4745 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 20:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 372..532 | 120 | 58.4 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 372..435 | 113 | 64.1 | Plus |
FMO02196.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:08:25 Download gff for
FMO02196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12273-RA | 113..1182 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:52 Download gff for
FMO02196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 108..1177 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:19 Download gff for
FMO02196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 108..1177 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:19 Download gff for
FMO02196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694110..23695179 | 1..1071 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:52 Download gff for
FMO02196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581633..19582702 | 1..1071 | 98 | | Plus |
