FMO02201.5prime Sequence
412 bp (247 high quality bases) assembled on 2008-05-06
> FMO02201.5prime
AATCAAAAGAGGGCCCTTATCAGTCGACATGACGCGCGTTTACACTCAGA
AAAAGGTAAACCGGCGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGG
TGCCCCTTCATCTGAGCCTACTTTTCAAACCATCGCAGCAATATAGAAAA
AAGCCTGGCGCTCGGCGACTGGCAAAAAATCAAAAAGGAGGAACTCAATG
CTATGAGGGTCATTAAGCAGATCAAGAATCTACTTCTGGAAATGGATGCA
CTGCGAGAAAAAGTACGGGAGGAGGATCTGGAACGTTTCAACAACCTAAT
GAAACCTGGCAGGGATACTGCCTTCGCTGGCATGAAGGAATTCGCGGATT
TCTTGCTCAAATCACCCACCTCCCCTTTTTTTCTCAGTTAAACACAATCT
GAAAATTACCAA
FMO02201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx17-RB | 1566 | CG7452-RB | 367..687 | 57..378 | 1360 | 95 | Plus |
| Syx17-RA | 1566 | CG7452-RA | 367..687 | 57..378 | 1360 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4403950..4404197 | 99..347 | 1075 | 96.4 | Plus |
| 3L | 28110227 | 3L | 4403853..4403897 | 57..101 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:27 has no hits.
FMO02201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:54 Download gff for
FMO02201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7452-RA | 354..685 | 57..388 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:09 Download gff for
FMO02201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx17-RA | 367..698 | 57..388 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:40 Download gff for
FMO02201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx17-RA | 367..698 | 57..388 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:40 Download gff for
FMO02201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4403853..4403895 | 57..99 | 97 | -> | Plus |
| 3L | 4403951..4404197 | 100..347 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:09 Download gff for
FMO02201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4403853..4403895 | 57..99 | 97 | -> | Plus |
| arm_3L | 4403951..4404197 | 100..347 | 96 | -> | Plus |
