FMO02203.5prime Sequence
1211 bp (990 high quality bases) assembled on 2008-05-06
> FMO02203.5prime
CAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCTCCGTGGCG
GCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTCATCGAGGT
GGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTTCGATGCAT
CCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATCCGGATGCG
CACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGATCTATACGT
GAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAAGCAATGGC
CAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCATGCGGCTCC
TGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTGTGCATCCA
TTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCTCGTCTCCT
GCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCGGCGCCGCC
TGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCCTACGGATC
TAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCACCATGTGA
ATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCAAGTGTTCG
CACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGACAAGCACTT
CGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAATTCAAGAGG
AGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTTTATGAGGA
TCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGCAAGGAGC
TGGGCGGTCATGCCATTCGCATTTGGCTGGGGCGTTTGGGGCGAGGAAGA
AATTCCGTACTGGCTATTGGTAACTCGTGGAACAACGATTGGGCGATCAT
GGTTTCTTCCGCATCCTGCGTGCCAGGATCATTGCGGCATCGAAAGCTCA
ATTCGCGGACTGCCCAGCTGCAAGCTTTCTAGACATCGTTGGCGCGCGGC
CAAGGTAGTGTCATAATCATAATCTAATCATATCATAATCACACCTAGCC
TAGAGATCCTGTCATGACATATGCTGGATTCCACATAAAAAGCCCGGGCG
CCCGAGCGTCTGAACAATTCGAAAGTGGACTCCTGTGAAGGTCTCTATCT
ATGCGTGACCT
FMO02203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CtsB1-RC | 1594 | CG10992-RC | 242..1240 | 9..1003 | 4755 | 98.8 | Plus |
| CtsB1-RA | 1425 | CG10992-RA | 242..1240 | 9..1003 | 4755 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13780201..13780653 | 1003..555 | 1900 | 97.1 | Minus |
| X | 23542271 | X | 13781471..13781734 | 391..128 | 1320 | 100 | Minus |
| X | 23542271 | X | 13781158..13781326 | 558..390 | 845 | 100 | Minus |
| X | 23542271 | X | 13781808..13781929 | 130..9 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:07 has no hits.
FMO02203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:57 Download gff for
FMO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10992-RA | 253..1255 | 9..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:55 Download gff for
FMO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtsB1-RA | 151..1153 | 9..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:57 Download gff for
FMO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtsB1-RA | 242..1244 | 9..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:57 Download gff for
FMO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13781810..13781929 | 9..128 | 100 | | Minus |
| X | 13780211..13780650 | 558..993 | 97 | <- | Minus |
| X | 13781159..13781326 | 390..557 | 100 | <- | Minus |
| X | 13781473..13781733 | 129..389 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:55 Download gff for
FMO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13674244..13674683 | 558..993 | 97 | <- | Minus |
| arm_X | 13675192..13675359 | 390..557 | 100 | <- | Minus |
| arm_X | 13675506..13675766 | 129..389 | 100 | <- | Minus |
| arm_X | 13675843..13675962 | 9..128 | 100 | | Minus |
