FMO02206.5prime Sequence
1188 bp (1030 high quality bases) assembled on 2008-05-06
> FMO02206.5prime
CAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCCTCCTGCTG
CTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTGGAGATCTT
TGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCATGGGCATCA
ACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCACCCTGTCC
ATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAACATCCAGTT
CCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTCGCGCCGAG
AGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGAAGTCTGCC
CTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAGGGCGCCTT
TATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGCCTGGGCGG
CCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCACCAAGCTG
AAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTGATCCTTAG
CGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCAGATCCCCT
TGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCAGCAAGGCC
AACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAACTGGAGGC
CGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCACGCGCGCC
TTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGACAGCAAGG
CTCCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAGATTCAGACT
CGCGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCCAGAAGAGCAC
GGTGAGCGGCGGCTTCTGGACTGACGAGGATCTTACCGAGCTGATTCGCT
TGGTAAAAAGTATCCTGGCGAGCTGGCAGCCGCTGGAACACTTTCGCGAG
TCGATGACGGCACGTTCAGGAGGTGACCTTTATGGCGGCAGATGAGGAGA
ATGGCTACCGCATTCCGGCCAAACTGACAGCGTGATCGAGCTTCTCGTCA
GGAGTCTACAGGCCACGTAGAAAGTGAAAAGGCACGATCGACTCAGCGGA
AAAACTGTCTATTTCCGGAACCCACTTGTGACTCAAGA
FMO02206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 2893 | CG7556-RB | 152..1260 | 9..1106 | 5175 | 98.4 | Plus |
| CG7556-RA | 2005 | CG7556-RA | 152..1260 | 9..1106 | 5175 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19178992..19179679 | 696..9 | 3410 | 99.7 | Minus |
| X | 23542271 | X | 19178040..19178247 | 895..689 | 975 | 99 | Minus |
| X | 23542271 | X | 19177750..19177964 | 1099..894 | 575 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:47 has no hits.
FMO02206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:59 Download gff for
FMO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 268..1385 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:18 Download gff for
FMO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 143..1260 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:27 Download gff for
FMO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 143..1260 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:27 Download gff for
FMO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19177765..19177962 | 896..1084 | 94 | <- | Minus |
| X | 19178040..19178247 | 689..895 | 99 | <- | Minus |
| X | 19179000..19179683 | 1..688 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:18 Download gff for
FMO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19071798..19071995 | 896..1084 | 94 | <- | Minus |
| arm_X | 19072073..19072280 | 689..895 | 99 | <- | Minus |
| arm_X | 19073033..19073716 | 1..688 | 99 | | Minus |
