FMO02207.5prime Sequence
1237 bp (1039 high quality bases) assembled on 2008-05-06
> FMO02207.5prime
CAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACCTCTACATG
GAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAGGCAGGTGC
CGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGTTATGTGGT
CCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTATACCGACGC
GGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATCACCACCAG
CGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCTGGGGCGCA
AGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCCGAGCAAAG
TCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGCTTCGACAT
CGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCTAACCGGTG
ATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCATCCAGCTG
GCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAACACCTTTGG
GCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAAACTTATGA
GACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATGACAACGGC
ATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGATACGTTGTT
CATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCTAGTCATTT
GCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGGCATTATGGCCACCCC
AGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGATTTGCCG
GCAGCACAGGCACTCCTCATCCCCACCAGGACAAGAACGCCATCGATGCC
GTGTGCAGTTTGCCATCACAATCTTAGTTCCCCGTAGAGGATATAATTTT
GTATGGCTGGAGCATTGGTGGCCTTAGTACACTATACGCTGCCTCTGTGT
ATCCGGATGTCAAGGAGTGTACTAGACGCCCCTTCGACGATGTGCTCTAC
TTGCCGTTCCTCGCATGCCAGCTGCACTGGCGGCATGTCAGGTAGCCATT
CGAACATACTGTAATTGACATGCCGACCTGGCACGCGAATTCCATGAACC
ATATTCCTTATTCGCCGGCACTGAGAGATGAGAATCTCATTGTCCCGAGG
ACACCACTCCACTCTGTGAGAAGACGAGCGGAGGTAA
FMO02207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1309-RA | 1859 | CG1309-RA | 114..1299 | 9..1183 | 5340 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4260368..4260892 | 601..1116 | 2040 | 97 | Plus |
| 3L | 28110227 | 3L | 4259743..4260057 | 134..448 | 1575 | 100 | Plus |
| 3L | 28110227 | 3L | 4260108..4260261 | 448..601 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 4259543..4259668 | 9..134 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:38 has no hits.
FMO02207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:00 Download gff for
FMO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1309-RA | 125..1254 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:32 Download gff for
FMO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1309-RA | 114..1243 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:40 Download gff for
FMO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1309-RA | 114..1243 | 9..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:40 Download gff for
FMO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4259543..4259668 | 9..134 | 100 | -> | Plus |
| 3L | 4259744..4260057 | 135..448 | 100 | -> | Plus |
| 3L | 4260109..4260260 | 449..600 | 100 | -> | Plus |
| 3L | 4260368..4260911 | 601..1132 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:32 Download gff for
FMO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4259543..4259668 | 9..134 | 100 | -> | Plus |
| arm_3L | 4259744..4260057 | 135..448 | 100 | -> | Plus |
| arm_3L | 4260109..4260260 | 449..600 | 100 | -> | Plus |
| arm_3L | 4260368..4260911 | 601..1132 | 96 | | Plus |
