FMO02208.5prime Sequence
1168 bp (983 high quality bases) assembled on 2008-05-06
> FMO02208.5prime
CAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTGGGATCCAG
AGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAATTGTCCAT
GCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACCCGACTACG
CCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACTTCATTGAC
ACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAGCTGGAGCT
CTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGCGGGTGAGG
GCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCCGAAGATTG
CGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGGAGGGAACG
CCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAGCGAAGACG
AGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCACCAATAAG
ATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGCGACACAGA
GCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCAGCAGCAGC
GCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGGAATCGTCC
GAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAGGAGGACAA
CGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCGTGCCACCA
TCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGGAGGCGGAG
GCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGATGGTCGAG
GAGAGCGTCAAGAAAGATCTGGAGAAGACCAAGCCGGAGACCAATGAGGC
CTGCATCGAGGACGTGTGCACGGACGACGAAAACGACGAGTGAATACGAG
GCCTGAAGCTGCTGACTCAGCGATGAGCGGGATCGCGAGGACGTGATAAC
GTCGACGCGGAGCTGGACATGATCGCATGCCCAACATGACGAGAGGACGA
CGCAGGAGCTGCTCGACCTAGTGGTTCACCACAGCCACTAGCAGTCAGTC
CTGCCAAGTCATACTCGTGCCTCACTGGTGAGGATCACGTCCTAGTCGAC
TTCGCCCAAGACACTCTT
FMO02208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfap1-RA | 1682 | CG1017-RA | 109..1180 | 9..1062 | 4895 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1941314..1942186 | 86..955 | 4235 | 99.5 | Plus |
| 3L | 28110227 | 3L | 1941176..1941256 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1148 | 745..835 | 114 | 62.4 | Plus |
FMO02208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:01 Download gff for
FMO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1017-RA | 111..1160 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:34 Download gff for
FMO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfap1-RA | 105..1154 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:05 Download gff for
FMO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfap1-RA | 105..1154 | 1..1040 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:05 Download gff for
FMO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1941172..1941254 | 1..87 | 95 | -> | Plus |
| 3L | 1941316..1942237 | 88..999 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:34 Download gff for
FMO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1941172..1941254 | 1..87 | 95 | -> | Plus |
| arm_3L | 1941316..1942237 | 88..999 | 98 | -> | Plus |
