FMO02209.5prime Sequence
1206 bp (869 high quality bases) assembled on 2008-05-06
> FMO02209.5prime
CAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCCGTTCTACA
CTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGAATTCCAGC
TTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAACACCTGCA
ACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTGATAAGGGG
CTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTTGGCGGCAA
GATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCTCGGAGTGG
GTCGACTATATCAAAATATCGATAAGGAGTACTGGGCCGTGGCGGTTGTG
GGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTCATCGACGA
GGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCGAGCACTTC
AGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGTATCCGGAG
CAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAATGTGAACAA
GCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTACGGATCCA
CAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAATCACAGAAT
TTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACGCCATCCAT
TTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGTTTCAGTCG
AAGTGCGTTCAATGGATTGGATTGAGACTCATAATCTCAACTCCTTCCTC
ATGGTGGCCAAGGGCTCGTGCGAGCCACTCATTATTCTTAGAGGTTAGCT
ATTGCGGCACCTCACCGGAGAGCGACCCATTCTTATGCTCGGCTAGGGAC
TGACATACGAAGCGTGGTCTATGCCTGCATCCGAAAATGGGAATGGACGA
GTATCGCGGAACAGTTTCCTGGAGCTGCAGTCTGCGTGGCGCATTCTAGC
GCAGTCGCACTATCGTGCTATATGGTGTCCGCCGTATACCTCTGGGGTGA
AAATTGCCATCGGGAATGGCCACCAGACGGCGAATGTGGTCCACCCTAAC
TACGGCCAGAACATGCCAATAGGGAATCTCATTGCCGGACGACTCTGGGC
GAATCTGCCTACTCAACGCATTCAGACCCAGCATGTGGGGAGGAAGCGGT
GCTCTA
FMO02209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap8-RA | 2055 | CG4439-RA | 218..1292 | 9..1075 | 4800 | 97.2 | Plus |
| loopin-1-RC | 2078 | CG4750-RC | 591..1114 | 438..959 | 710 | 76.7 | Plus |
| loopin-1-RA | 2022 | CG4750-RA | 657..1180 | 438..959 | 710 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16491495..16492470 | 108..1075 | 4035 | 96.3 | Plus |
| 2R | 25286936 | 2R | 16535635..16535989 | 474..828 | 635 | 78.6 | Plus |
| 2R | 25286936 | 2R | 13597183..13597677 | 334..828 | 540 | 73.9 | Plus |
| 2R | 25286936 | 2R | 16491317..16491420 | 9..112 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:01 has no hits.
FMO02209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:03 Download gff for
FMO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4439-RA | 170..1269 | 1..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:21 Download gff for
FMO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap8-RA | 212..1311 | 1..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:35 Download gff for
FMO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap8-RA | 212..1311 | 1..1094 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:35 Download gff for
FMO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16491311..16491418 | 1..110 | 96 | -> | Plus |
| 2R | 16491498..16492470 | 111..1075 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:21 Download gff for
FMO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12378816..12378923 | 1..110 | 96 | -> | Plus |
| arm_2R | 12379003..12379975 | 111..1075 | 96 | == | Plus |
