FMO02210.5prime Sequence
1223 bp (1015 high quality bases) assembled on 2008-05-06
> FMO02210.5prime
CAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCAGCAAGACG
CCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGGAGGTCGAA
GTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGAGGACTCCT
CGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGAAGCGGGAG
GAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCATGTGCCCAA
GGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGGAGATCGAG
TGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAGTCATCCAG
ATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACGTATCCGCT
GCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGTTGGCGGCG
TGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGACCCACAAG
AGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTCTGCTACTG
CGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTTC
ATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTAACAGGGGA
TTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCATCCGGAGGT
ACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGCTGATCCCG
TGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCTTCTTCTGC
TTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAGACCTGGAC
CCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAGCTTGAACT
TCACTTGGTCTGTGAACAGTGCCGCCATCTGTGGGGATCCCGTCCATACG
ATAAAGCGGATCATGCCAGCGAGAAAATCTATGTGTCCCTGCTGGCCATG
GGCGAGGAATGCACACTACCACTACGTATCCCTTGGGACTACAAAGCAGC
TGACTGGGCAACTAACCGTGAACTTCACACATGTGCTTGAATGCTTCCAA
GTTGGGGTGGACTTGAACTGAAACAGCCATCAAGGAGCTTGGTGGCTTCA
ACTCGAAGATACGGCAGACCATAGTTTAACTTGGCGGTCCGAGGAGATCA
AAGACAGCAGCATGTTGTGCCCT
FMO02210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-RB | 2318 | CG9747-RB | 512..1656 | 9..1139 | 5175 | 97.7 | Plus |
| CG9747-RA | 2138 | CG9747-RA | 332..1476 | 9..1139 | 5175 | 97.7 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 564..685 | 579..700 | 265 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30190318..30190741 | 432..9 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 30186430..30186824 | 954..561 | 1925 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30187389..30187519 | 563..433 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 30186154..30186282 | 1078..956 | 285 | 92.2 | Minus |
| 3R | 32079331 | 3R | 12436889..12436977 | 588..676 | 250 | 85.4 | Plus |
| 3R | 32079331 | 3R | 12446124..12446221 | 579..676 | 250 | 83.7 | Plus |
| 3R | 32079331 | 3R | 30197376..30197452 | 676..600 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:23 has no hits.
FMO02210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:51 Download gff for
FMO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 337..1472 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:06 Download gff for
FMO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 339..1474 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:57 Download gff for
FMO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 332..1467 | 9..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:57 Download gff for
FMO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30186430..30186821 | 564..955 | 99 | <- | Minus |
| 3R | 30187389..30187519 | 433..563 | 100 | <- | Minus |
| 3R | 30190318..30190741 | 9..432 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:06 Download gff for
FMO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26012152..26012543 | 564..955 | 99 | <- | Minus |
| arm_3R | 26013111..26013241 | 433..563 | 100 | <- | Minus |
| arm_3R | 26016040..26016463 | 9..432 | 100 | | Minus |
