FMO02214.5prime Sequence
1223 bp (1024 high quality bases) assembled on 2008-05-06
> FMO02214.5prime
CAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCTCCGCCCAG
CGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAGATGACCGT
GCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCGCGACGACC
GCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTGCTTACAAG
GTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTCATCGACAC
GCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGCTGCCATGG
CCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCTCCATGCAG
GCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTACATGTCTGC
CGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGGAGCCGCTT
CCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGTACGCCCAC
TGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGATGCCCGCGG
ACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTTCCTGGAGA
ATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACGTGGCCGAC
AAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGGCCGGGCAA
GGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATCGCTTCTGG
CAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCATTAACCTG
CGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCTGTACGAAA
GACCCACCATCTGGTGACCGTGGAAAACGGCTGGCCCCAACACGGCGTTG
GAGCTGAGATCTGCGCCCGCATAATGGAGGACCAGACCTTCTTCGAGCTG
GACGCCCCGTATGGCGCTGCGCCGGCGTTGATGTGCCCATGCCCTATGCC
AAGACGCTGGAGCCACGCCCTGCCCGGCGTTCAGATCCTCGTGGAGGCGA
CTCTTTAAGTCTTGGGGTGCAAGGTGGGCAAGGCCCGCTGCGCACAGCCA
GCCTTTCTATGACTATTCGTTTGGCGGCGGCCAGGTAATGTCATACCTAT
CCTATCTAGCTAATCGACTAGCTAGAGATCCTGCTAGGACTATGTGCCTG
TGATCTCTCTCCCATAAAACAAC
FMO02214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RD | 1386 | CG11876-RD | 51..1136 | 9..1092 | 5180 | 98.7 | Plus |
| CG11876-RA | 1455 | CG11876-RA | 120..1205 | 9..1092 | 5180 | 98.7 | Plus |
| CG11876-RB | 1025 | CG11876-RB | 154..507 | 9..362 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29115094..29115508 | 363..777 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 29113258..29113451 | 9..202 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 29113992..29114155 | 199..362 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 29115747..29115941 | 894..1085 | 710 | 93.3 | Plus |
| 3R | 32079331 | 3R | 29115566..29115687 | 774..895 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:02 has no hits.
FMO02214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:10 Download gff for
FMO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RD | 144..1248 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:42 Download gff for
FMO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RA | 110..1214 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:49 Download gff for
FMO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RA | 110..1214 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:49 Download gff for
FMO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29113248..29113449 | 1..200 | 98 | -> | Plus |
| 3R | 29113994..29114155 | 201..362 | 100 | -> | Plus |
| 3R | 29115094..29115505 | 363..774 | 100 | -> | Plus |
| 3R | 29115567..29115686 | 775..894 | 99 | -> | Plus |
| 3R | 29115748..29115941 | 895..1085 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:42 Download gff for
FMO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24938970..24939171 | 1..200 | 98 | -> | Plus |
| arm_3R | 24939716..24939877 | 201..362 | 100 | -> | Plus |
| arm_3R | 24940816..24941227 | 363..774 | 100 | -> | Plus |
| arm_3R | 24941289..24941408 | 775..894 | 99 | -> | Plus |
| arm_3R | 24941470..24941663 | 895..1085 | 93 | == | Plus |
