FMO02215.5prime Sequence
1224 bp (697 high quality bases) assembled on 2008-05-06
> FMO02215.5prime
CAATCCACATGGACAACAGCGCGTTGATGCCACAGGCGAGCGGACGTCAT
ATGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAGCTTTACAA
GTCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGTGGAGCAGG
TGTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGCGAGAGTTG
GAGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTTTATCAACG
CTTCTTGCCCAATATGTGGGTGGACATCACCTATGGGAGTTACGGAAGTT
ACCAACACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCTGGACAGAG
ATGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAGACCCTTCG
CTTCCGGGACCATGAAATCCAGTTCAAACTGAAGATGATAAGGCCCGTGG
AGCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTAATAAAAGT
AGCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCCTCCAAGCC
GGATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTTTTTGGCTG
TGCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACGACTTCATG
ACCAACGATGTCAACAAGAGGAACATTTTGGGGACATTCGGTTTCTGGGA
CTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCTACTATTCCT
ATGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTTTCACACATA
CAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAACAAGATTGTG
GGTGCCATCTTCATACTTTTGACCATGATTTGGAAAGACATTGTCCGTCG
TGGACGTCCGGAACCGAAACAGCACAGCTGCATCTGGATGCCAGTAGCCG
CTACAAAAGCATCCATACGACGTTCCGAACCAAATCGACGTATTCCCAGG
TGTGCAAGCTTTCTAGATCATTCGTTTGGCGTGCGGAGGCAAGGTAAGGA
CATAACCTAATCATATCTAACATGATACCACTGCTTAGAATTCTGGCCAC
GACTAGGCCTGGATTCTCACATACAACGCCCCTGGCGCTACCTGGAGCGT
CTGACTAACCGATTGCACTTCTGGAGCCATTACTGACTCATTCAGAGCAG
GTCCAAGCGCAAGTCTGCAATTCA
FMO02215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 264..1269 | 1..1002 | 4615 | 97.5 | Plus |
| CG4287-RA | 1648 | CG4287-RA | 275..1273 | 8..1002 | 4610 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962542..15963540 | 1002..8 | 4510 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:17 has no hits.
FMO02215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:11 Download gff for
FMO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 246..1255 | 1..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:59 Download gff for
FMO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 246..1251 | 1..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:07 Download gff for
FMO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 264..1269 | 1..1002 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:07 Download gff for
FMO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962542..15963545 | 1..1002 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:59 Download gff for
FMO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788264..11789267 | 1..1002 | 97 | | Minus |
