FMO02216.5prime Sequence
1217 bp (955 high quality bases) assembled on 2008-05-06
> FMO02216.5prime
CAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCCCAGATTCC
GACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAGGTGAAACG
CTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTACGATGCAG
TCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCAAACTCGTC
CTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTGATGCTCGC
CTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGAAAGGGCAG
GGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGATGATGGCC
TGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATTGTGGGCCT
GCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATATGGAATGA
CACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTGTGCGTCTG
CTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGCTGCACTGC
CATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAAGCTGTTGG
TGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCTACACGCCC
ACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAGATCCTGCC
GCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGGCTACAACA
CGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATTGCCCGGAA
TATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATTGGCAACAT
GGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTTCCTCGTCA
TGGATGAGCAGTCACTTCGCGAGATCAGCATCGAGTATCTCATCCTTCAG
TCACAAGATACTGACGGCATTCTTGACTTTCATCTTCATCATTGGAGCTA
CTCGTCGATAGCTCGGGTCAAAGGATGAATGAACACTTTCATTGAATCCT
ACTGATCACCGCAAGTCATCTGCACACCTTGTCATATTCAGCCTTCTGTG
GCTTCATCTCTCAAAGCAGAACCAATACATGGGGCAACTTCGGAATGCAT
GTGGCTGCATACAAACATCTTCCAGGCCACGAAATAATACTCCACAACAC
CAAAAGACGGCGTCGAT
FMO02216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gasz-RA | 1908 | CG2183-RA | 96..1258 | 9..1158 | 5155 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8168188..8169063 | 91..967 | 4290 | 99.5 | Plus |
| 2R | 25286936 | 2R | 8168043..8168128 | 9..94 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 8169129..8169174 | 977..1022 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:51 has no hits.
FMO02216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:12 Download gff for
FMO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2183-RA | 97..1189 | 9..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:38 Download gff for
FMO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2183-RA | 96..1188 | 9..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:08 Download gff for
FMO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gasz-RA | 96..1188 | 9..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:08 Download gff for
FMO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8168043..8168126 | 9..92 | 100 | -> | Plus |
| 2R | 8168190..8169073 | 93..976 | 99 | -> | Plus |
| 2R | 8169129..8169191 | 977..1035 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:38 Download gff for
FMO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4055548..4055631 | 9..92 | 100 | -> | Plus |
| arm_2R | 4055695..4056578 | 93..976 | 99 | -> | Plus |
| arm_2R | 4056634..4056696 | 977..1035 | 92 | -> | Plus |
