FMO02218.5prime Sequence
1228 bp (1037 high quality bases) assembled on 2008-05-06
> FMO02218.5prime
CAGTCGACATGGGCGGATCGGCAGTGCAGGTGATCAACGCCTCCGAGGAG
CACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTAATGCGGGA
TGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGGAGCCTTCC
GAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATATGTATTCA
AAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAATCAGATCC
GCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACACCACCGGCA
TTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACGGCGACAAG
ATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGCCAGAGCAC
GGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCTGTCCTCGG
TGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACCTGCAGCAC
CTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGACACCGGCAA
AAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAGCTTTCCCT
ACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGAAACGACGT
CTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTGCGTCGCCA
CATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCCCCATCCAG
GTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGCAGGACATC
ACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATGCTGCTGGC
ACCGGACACCTTGTCTACAGGAGATCAGCGGACAGCGGGTGCGGGCCCGC
GATCTCATCCAGTACTTCCAATCGTACATGACATCTACAAGGCAACGAGC
TGCCCGAGCCGAAGAGCATGCTGGTGGCCACCGCAGAGGCTACCATTTGA
CTGCCGTGGCCGCCGCCAAGAGCTGTACGGACAGCTCATGGAGGAGTGTG
CGGTGGACGCGCCGTACTTAGCCCCCGCCCATCCTCAGACGGACACCTGC
GGTGAGGACAGGACTGTTTCAGTTCGCCCGCCAGCGCAAGATGGGTGGGT
GAGGATCACGGAAATCCGCCAGACACTGGAAGAAGTATCTTGAGGAGTTC
TCTCCACCATTTTACTATCGCACGACCT
FMO02218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-RC | 2907 | CG6668-RC | 275..1484 | 9..1201 | 5335 | 97.2 | Plus |
| atl-RB | 3207 | CG6668-RB | 575..1784 | 9..1201 | 5335 | 97.2 | Plus |
| atl-RA | 2889 | CG6668-RA | 257..1466 | 9..1201 | 5335 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24632155..24633115 | 202..1148 | 3995 | 97.3 | Plus |
| 3R | 32079331 | 3R | 24631897..24632091 | 9..203 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:10 has no hits.
FMO02218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:15 Download gff for
FMO02218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6668-RB | 566..1743 | 1..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:23 Download gff for
FMO02218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 253..1430 | 1..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:52 Download gff for
FMO02218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 253..1430 | 1..1165 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:52 Download gff for
FMO02218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24631893..24632091 | 1..203 | 98 | -> | Plus |
| 3R | 24632157..24633135 | 204..1165 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:23 Download gff for
FMO02218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20457615..20457813 | 1..203 | 98 | -> | Plus |
| arm_3R | 20457879..20458857 | 204..1165 | 97 | | Plus |
