FMO02220.5prime Sequence
1225 bp (1042 high quality bases) assembled on 2008-05-06
> FMO02220.5prime
CAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTCTGCGTAGC
CAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGACCAGGCGGA
CAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGGCCAAGAGC
TGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACGAGCACGTC
AGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGCGAGCTGAG
CAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCACCCTGGAAA
AGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTGGCATACGT
TTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGCGATGCGGC
CACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACAGTACTCCG
TGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCTATCTGGAG
GACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCATCATTGCT
GCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAAAGTCTGTT
ATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCGCCCAGCGA
TATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAGAGGATGAC
GGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGCCGGACAGC
AGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCTGTCAGCAC
TTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGCATCATTCG
GCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGCAGGACCACCAAAGCT
GCCACCTCCGATGGATCCTCGATCTTGGATCGGGCTGTTTTCGAGCACAA
TCTGTTGTCGGCTAGTAAGCTGTACAACAACATAACTTTTGAGGAGCTAG
GCGCTCTGCTGACATACCCGCGGTGAAAGCAGAGAAAATTGCCTCCCAGA
TGAATACCGAAGTCGCATGACCGGACACATCGACAGATCTTCGCATTTGT
GCACTTCGAGAAATCGGACCTACTCGCCTCAATGGAAAGCCAGATCCGAT
GCATGCTACAGGTATCATATAAGAGAAGATAGTCCGCGAGTCCGAGTTGA
ATGAGGATAATCCGTGAACGTACAT
FMO02220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1466 | CG8725-RB | 42..1185 | 9..1147 | 5335 | 98.2 | Plus |
| CSN4-RA | 1703 | CG8725-RA | 279..1422 | 9..1147 | 5335 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7972616..7973190 | 9..583 | 2875 | 100 | Plus |
| 2R | 25286936 | 2R | 7973246..7973783 | 580..1112 | 2355 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:52 has no hits.
FMO02220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:17 Download gff for
FMO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8725-RA | 271..1409 | 1..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:17 Download gff for
FMO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 271..1409 | 1..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:57 Download gff for
FMO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 271..1409 | 1..1135 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:57 Download gff for
FMO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7972608..7973188 | 1..581 | 99 | -> | Plus |
| 2R | 7973248..7973783 | 582..1112 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:17 Download gff for
FMO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3860113..3860693 | 1..581 | 99 | -> | Plus |
| arm_2R | 3860753..3861288 | 582..1112 | 97 | == | Plus |
