FMO02221.5prime Sequence
1207 bp (1030 high quality bases) assembled on 2008-05-06
> FMO02221.5prime
CAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGGTTCATCCG
CTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTATTCACGGA
GATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGGAGGTGGAA
ATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACAGCTCCAAG
AAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGATCACGAGG
ACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCATTGCCATGG
CGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGCTCCTGGAG
GCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCACTGATCGA
GGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAGCAACCTCT
TCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCATTGCTGTG
CCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTGGAGGGCAT
TGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCACATCGTCG
AATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGGTGGCTGTT
CTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACGGCCGTCTT
GCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTACGAGCCTGC
AGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCGATTATCTT
GTTGAGGAAAATGTTACGAATTCATTCAACGAATTTGGACAGACCATGCT
CTTTGAGATGAACCGCCTGGGCATGCTGGTGGAGATTTCGATGCTCAGCG
AGGCTGCCATGTTGGCTGTTTGAAAACTGCCAAAGCTCTGTTTACTCACG
AATGCAACACCGCTGTCATGTGCAATAGCAGCAACATTGCTTCCATTCCA
GACCACGTCTCAGCTATTGCGAAAATGGAGGCGTATCTGCTCACTGACGT
GTGGCGATCGGACCCTGGGCGTTCGCGAGGCATCATGCATCACTATGTGG
CGCAGTACGGAGGATCACATGACTGAGATCCGAACCTTGGCCCTCCTCTG
CGAACTGCAGGATAGGGGTGTGGCCAGGTCGTCACGTGCTCTCTATATTA
ATGGAAC
FMO02221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5282-RA | 1543 | CG5282-RA | 113..1222 | 9..1099 | 5035 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20425126..20425959 | 842..9 | 4140 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20424903..20425075 | 1009..841 | 655 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:03 has no hits.
FMO02221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:18 Download gff for
FMO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 144..1268 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:56 Download gff for
FMO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 102..1226 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:35 Download gff for
FMO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 102..1226 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:35 Download gff for
FMO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20424898..20425073 | 843..1013 | 96 | <- | Minus |
| 3L | 20425126..20425970 | 1..842 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:56 Download gff for
FMO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20417998..20418173 | 843..1013 | 96 | <- | Minus |
| arm_3L | 20418226..20419070 | 1..842 | 99 | | Minus |
