FMO02226.5prime Sequence
896 bp (896 high quality bases) assembled on 2008-05-06
> FMO02226.5prime
AAATACCAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGG
AGAAGGTGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAG
TTCAACGAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCT
GCTAAAGGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGC
TGACTCCGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAA
CACAACGATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGC
CTTCAAATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAG
AGGCAGATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACG
CTCGCCTACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGG
AAAGGCGCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACC
AGTTCCAGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCAT
GTGACCTTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAA
GGTGCAGGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAA
AGGAGTGCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAG
GAGGTGATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCAT
TTCGGAGAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTC
GCCAGTTGCCCATCACCAGGACCAGATCGACTGGAGCAAAATCGTCTCGT
ACAGCATTGGCAAGAACTGAGACGCAGCAAGCTTTCTAGACATTCG
FMO02226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpa-RA | 1918 | CG10540-RA | 236..1092 | 23..876 | 4210 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21058611..21059043 | 433..864 | 2115 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21058022..21058263 | 23..264 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 21058383..21058555 | 263..435 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:25 has no hits.
FMO02226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:25 Download gff for
FMO02226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10540-RA | 222..1093 | 15..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:05 Download gff for
FMO02226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpa-RA | 226..1097 | 15..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:12 Download gff for
FMO02226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpa-RA | 226..1097 | 15..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:12 Download gff for
FMO02226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21058012..21058262 | 15..263 | 98 | -> | Plus |
| 2R | 21058384..21058553 | 264..433 | 100 | -> | Plus |
| 2R | 21058612..21059062 | 434..881 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:05 Download gff for
FMO02226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16945517..16945767 | 15..263 | 98 | -> | Plus |
| arm_2R | 16945889..16946058 | 264..433 | 100 | -> | Plus |
| arm_2R | 16946117..16946567 | 434..881 | 98 | | Plus |
