FMO02228.5prime Sequence
1203 bp (1014 high quality bases) assembled on 2008-05-06
> FMO02228.5prime
CAGTCGACATGGCGTCCAGTAAAATCCCCGATTGGGTAACTGCAGAAATA
TTTGAAGATTTGCTTAAGGCAAATGTGGATGGATACTCAAAAATTAAGAA
CTTTAAGGCGGACATTGGATCCGCTGCAGGTGAAAATTATGCCACCATTA
TGCTTCGAGTCAAAATCGAAGTTGAGCTGCAGGATGGCAAATCGAAATCG
GTATCCTACATGGTTAAGTTGCCCCACCAAGTGGAGGCTATTCAGGAGAT
GATGAAACGAACCAACATCTTCGAAATCGAGCGTACCATGTATAACGAGG
TTGTACCTGAACTAGAGGCGCTTTACAAGGCAGTAGGAGTGGACATCACA
TTCGGCGCCAAAAACTATGATCTCAAGAATGCCAAGACAGACTACGTGGC
CCTGGAGGATTTGGGGTTGAAAGGGTTCAAGAATGCCAACCGCCTCGAAG
GGCTGGATCAAGAGCACACGGAGAGGGTTCTGCGAAAGCTATCCCAATGG
CATGCTGCATCAGCTGTACGAGTGGCCACCAAAGGACCCTATCCCAAAAT
CCTACTTCAAGGCTTCTTTAAGGAGGAAAGCAGGCCCGTTATGTCTGAAA
TGATAAAAGGAATGGGCGCGAATTTCGTTAAAAGCTGCGCCACCTACGAA
GGTCATGAGGCTTATTTAGACAAAGTCAAAGCGTTACAGCCTGTTGCTAT
AGATAAGATTTTTGAGTTCGCCAAGGTCGAGCCAACGGAGTTCAACGTTC
TGAACCACGGCGATTCGTGGTCAAACAATATAATGTTTCAGTATGATGCC
TTTGGAAAGATCAAGGAGGTGTATTTGGTCGACTACCAGCTGCCCAAGTA
CGGAACCGTGGCACAGGATCTGCTCTACTTCTTGCTCTCATCCACAAAGC
TGGGAGATAACTGGGCCAAATTCGATTATTATATTAAAATTTATCACGAT
AATCTGGTGGAGCACTGAGATTTGAAATACTCGAACCCATTCCTAGTCTG
CGAGATATTCATTTGCGCTGTCAAATACGCTACTCGCTACCGTCGCTACT
GGTGTAATGTCTGCTGTTCTTTGATCCACGGACAGGGCTAGGTTAAAACT
CATAGGGTGCCATGACTTTCAATGCACCTCCACAGTCCGTACGCATCATC
AGCGCGCCATGGCCTTGATCGTTAAATCCGTGGGCTCCTCTGTGGAGATA
CTG
FMO02228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10562-RA | 1527 | CG10562-RA | 80..1223 | 9..1134 | 5080 | 97.4 | Plus |
| CHKov1-RE | 1463 | CG10618-RE | 94..1089 | 21..1012 | 1180 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25321958..25322452 | 677..183 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 25321548..25321889 | 1015..678 | 1445 | 96.2 | Minus |
| 3R | 32079331 | 3R | 25322504..25322678 | 183..9 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 25323997..25324411 | 677..263 | 590 | 76.1 | Minus |
| 3R | 32079331 | 3R | 25323641..25323880 | 965..726 | 420 | 78.3 | Minus |
| 3R | 32079331 | 3R | 25329061..25329223 | 183..21 | 245 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:13 has no hits.
FMO02228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:27 Download gff for
FMO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10562-RA | 66..1172 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:45 Download gff for
FMO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10562-RA | 72..1178 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:53 Download gff for
FMO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10562-RA | 72..1178 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:53 Download gff for
FMO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25321523..25321889 | 678..1035 | 96 | <- | Minus |
| 3R | 25321958..25322451 | 184..677 | 100 | <- | Minus |
| 3R | 25322504..25322685 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:45 Download gff for
FMO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21147245..21147611 | 678..1035 | 96 | <- | Minus |
| arm_3R | 21147680..21148173 | 184..677 | 100 | <- | Minus |
| arm_3R | 21148226..21148407 | 1..183 | 97 | | Minus |
