FMO02229.5prime Sequence
815 bp (815 high quality bases) assembled on 2008-05-06
> FMO02229.5prime
CAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGCAGAATGCA
CCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCGGCGAATGT
TGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACCCGTGGGCA
TGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGGACCAGTTG
CTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGCTTCGAGAC
GAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGTGTACTTCG
CGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCCGGTCGCGC
CCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTGCTCCACCT
GTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAGCTGCATGA
ACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTAGCGTTGAG
CAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAACACATGCGG
CGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAAGTGCTTCA
GCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGATCGGCAAA
ATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACCGATGCGGA
CTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCATGAAGGCGC
TCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACGAGCAGGCA
AGCTTTCTAGACCAT
FMO02229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb2-RA | 1586 | CG1893-RA | 62..850 | 9..797 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3045721..3046217 | 619..123 | 2485 | 100 | Minus |
| 3L | 28110227 | 3L | 3044972..3045133 | 777..616 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 3046637..3046751 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:25 has no hits.
FMO02229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:29 Download gff for
FMO02229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1893-RA | 60..854 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:15 Download gff for
FMO02229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb2-RA | 62..856 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:14 Download gff for
FMO02229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb2-RA | 62..856 | 9..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:14 Download gff for
FMO02229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3044973..3045131 | 618..776 | 100 | <- | Minus |
| 3L | 3045723..3046216 | 124..617 | 100 | <- | Minus |
| 3L | 3046637..3046751 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:15 Download gff for
FMO02229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3044973..3045131 | 618..776 | 100 | <- | Minus |
| arm_3L | 3045723..3046216 | 124..617 | 100 | <- | Minus |
| arm_3L | 3046637..3046751 | 9..123 | 100 | | Minus |
