FMO02232.5prime Sequence
1160 bp (989 high quality bases) assembled on 2008-05-06
> FMO02232.5prime
CAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATACAGATCCGC
AGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCGGCCACCAA
GCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAAGTCGCCGA
AGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGCCCAGCGCC
AACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTGGCCAACAG
CCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAAGCCATCGA
ATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCAATGGCACC
GCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGACCCAAGGT
GGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGTGCCGGAGT
TCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGGAGAACGTG
CTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTTATGATCTC
GCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGCCAGTCCGG
CCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGAAGGTGGAG
GAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTAACCACCTC
TGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAATGGACACA
GTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGGCCAAGGCC
ATTGAGCAAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCGGAGGTGGA
AGCCACCCCTGAGCCAGTTCCAGAACCTACTCCAGAGCCAGTGGCAGCCG
ACGAAAGGCGGAGGCCGTGGTAGAGGAGCCCACTCAAGCTCCGCAGCCGT
GAAGCAAGTTGAGTGGTGGAGCCAGCTGCTCCCGTGCAAATGACAGAGAG
AGAGATGCTGTTCTGCCACATGACTAGAGAGAGCTGCTCTGCACATGTCT
AGAGAGGCGGATGCATACATTTCCCAACCAACGAAGGATACGAATGAACA
GCTACAGTCGGAATCCATGGCCCTGGGAGTGACTCGAACCCAGAACCGGT
TTACACTTCT
FMO02232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1820 | CG1623-RF | 124..1114 | 6..990 | 4790 | 99.3 | Plus |
| hebe-RE | 1825 | CG1623-RE | 129..1119 | 6..990 | 4790 | 99.3 | Plus |
| hebe-RD | 1956 | CG1623-RD | 260..1250 | 6..990 | 4790 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9828810..9829800 | 990..6 | 4665 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 22:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 108..273 | 154 | 58 | Plus |
FMO02232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:31 Download gff for
FMO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-RB | 139..1135 | 1..990 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:01 Download gff for
FMO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1250 | 1..990 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:43 Download gff for
FMO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1250 | 1..990 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:43 Download gff for
FMO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9828810..9829806 | 1..990 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:01 Download gff for
FMO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5716315..5717311 | 1..990 | 99 | | Minus |
