FMO02234.5prime Sequence
1181 bp (1006 high quality bases) assembled on 2008-05-06
> FMO02234.5prime
CAGTCGACATGGCTTCCGAGCCGAGATCCCTAATTCTGCAATTGGACGAC
GACTGTCTGGCCGAGATTTTCGATCGCTTGCAGGACCTGCCGTCGGAAGT
GTCCTTCGCGAGGACTTGCCGGCGAGTGCAGTACATATGTCTGAGCAAGT
GGCGCACCAGCCATGCCTACGAGCAACTGGATCTGGAGAAGTGGCGGGTA
CTGTTGCCCAATCATGAAGACCTGGTCTACTTCCTAACCCAAATGCGTCC
GTACATCAGAGAAATGGGCGGCAGCAGCTGTCTGTGCTCCATTCTAAAAG
ATCTGGACGAAATGCACATTGCAGAGCTGCCCATGGTGACCAGCTTCTAC
TACGACCCAGACGGCGTCGATTGCTATCCCACGAACCGAAGCATCCGCAA
GCTGGCCCGCCTGCTGCCGGGCTTGAAAAAGTTGCGCCTTACCACACCCA
TCGACGGGCGGTACCTATCCAACTTCCAGCACCTGCAGGAGCTGCACCTC
TACGAGGACCAGCACAAGGCGTTTGAGCTGCAGCAGAAGTACCTGGACGA
GGTGTGCCGCACGCTGCACGATCTTCGGGTCCTGGACATTAGGACGTACG
ATATGATCAGTAAACTTCAGCTGGGAAACTGCCTGCAGAGCTTTAAGAAC
CTCACTGATCTTAAGCTCAATCTGGCCACCTTGAAACCCATTCTACCCGC
CGTTCTGGAGCTGCCCTCCCTCAGAAACTGGTGGTGCTGCTGGACAACGA
GTGGCATATCCCCCCGCTGGTCAGTCCGGATAGCTATGACCACAAGATCC
GCGAGGTCAGCGAGTTCTACGAGATCATGGCTTTCAAGGCCAAGGACATC
GTCGGCTTTGCCGTGACGGGTACTATATGCCCCTTGAACCGGGCTGGGAT
GAGAGCTGCCCATCTGGACGCATCGCAGCTGAGCGCCTGCCATTTGCAGC
TGGACTCATCGCAGACTACTAAGCGCTATAACTGTATGACGAGCTGCAGC
TGCTCTGCTGCGCACTGGATGACCTAGCGACGAATCTCTAGAATCTGACT
CTTGTCCACGATGAACCCTCGACGTTTCTACTGCGAAATCTGAAGCCCAC
TTTGCCAGGACTGGAGTATTCTAACGCGGATCGATCAGCAAAACGAATGA
CCTTCCACCTCTGGAGCTCTCTACTCGAGAC
FMO02234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7148-RA | 1594 | CG7148-RA | 157..1309 | 8..1129 | 4875 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21831546..21832097 | 559..8 | 2760 | 100 | Minus |
| 3L | 28110227 | 3L | 21831027..21831487 | 1008..559 | 1780 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:06 has no hits.
FMO02234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:20 Download gff for
FMO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7148-RA | 103..1163 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:09 Download gff for
FMO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7148-RA | 151..1211 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:01 Download gff for
FMO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7148-RA | 151..1211 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:01 Download gff for
FMO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21831027..21831486 | 560..1008 | 97 | <- | Minus |
| 3L | 21831546..21832102 | 1..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:09 Download gff for
FMO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21824127..21824586 | 560..1008 | 97 | <- | Minus |
| arm_3L | 21824646..21825202 | 1..559 | 99 | | Minus |
