FMO02236.5prime Sequence
1230 bp (1033 high quality bases) assembled on 2008-05-06
> FMO02236.5prime
CAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAGTCCAGCGT
CGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGCGGTGGTGA
ATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAAGGAGAACG
ATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATGATCGGCTG
CATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACTGGCCACTT
GGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCGCAGTATGG
CAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAACTGGAAATG
CTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATTGGAGCCCG
ATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGGCATGGACT
ATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGCGATATTGT
GACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTGGAGCTGTA
CGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAAGGCGGAGG
CTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTTGCATGACA
CCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCCTGTGGCAT
TACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCGTCTTCATT
CGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTCTGATGGAG
ATCACCTATTGCGGCACCAATCCCGAGGACAAACCCATTTTGTTCCTGGG
CAAAGGGCATTACCTTCAACTCGGGCCGCCATGAATCTGAGAAATGCAGG
GGATGGAGGAGTACAGGGCTTGCATGTCGGGAGCTGCATCCTGTGTGGCC
ATGATGCGTTGCGTGCGCACTGGCCCTGCCCATCAATGTCTGCTGCATCA
TCCCGCTGTGCGAGAACATGCATCGGGAATGGCCTTGTAAGCCAGGCGAT
GTGGGTCACCCTAATGAATCACAAAATCGATGGCTGTACGAATCTTGGAC
AGCCGGAATCTGTCGTTAATGGCGAATTCCTTTGTCTTCGGACAAGACAT
ATCAAGCCTGCTGAATTCGAGGTGCCCCTTGGTCAGGGTGATAAAAGGCT
TTCGCGCGGGCGGAGACCCCCGTGTAATAA
FMO02236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-RA | 2074 | CG32064-RA | 314..1526 | 9..1215 | 5240 | 96.7 | Plus |
| S-Lap7-RB | 2030 | CG13340-RB | 565..1370 | 258..1062 | 825 | 74.5 | Plus |
| S-Lap7-RA | 2122 | CG13340-RA | 565..1370 | 258..1062 | 825 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10491174..10492257 | 9..1092 | 4950 | 98.9 | Plus |
| 2R | 25286936 | 2R | 13778916..13779636 | 1021..303 | 665 | 74.4 | Minus |
| 3L | 28110227 | 3L | 10466702..10467354 | 166..818 | 565 | 72.4 | Plus |
| 2R | 25286936 | 2R | 13597189..13597708 | 298..817 | 320 | 70.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:48 has no hits.
FMO02236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:22 Download gff for
FMO02236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-RA | 306..1420 | 1..1114 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:11 Download gff for
FMO02236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 306..1420 | 1..1114 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:19 Download gff for
FMO02236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 306..1420 | 1..1114 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:19 Download gff for
FMO02236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10491166..10492280 | 1..1115 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:11 Download gff for
FMO02236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10484266..10485380 | 1..1115 | 98 | -> | Plus |
