FMO02239.5prime Sequence
1232 bp (899 high quality bases) assembled on 2008-05-06
> FMO02239.5prime
CAATCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGAAGAACAAG
TGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCACCAGAAGCA
GGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGATCGCCCACA
ATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTAAACCATAC
GAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCACAGATCTC
CGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGAGGATCACA
TCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGTGCAAGTCC
CTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGGGGTCAGAA
GGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACACGTGTTTGA
GCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAAAAGGCCAGC
AAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGGTCCAACCA
ATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAAGTTCTTTA
AAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTGGTGCTCTG
CAAATAAATGGACACGACGTGCCCACCACTGATCCATCTCATGTAGCGGT
CTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAATCTGGCCA
AGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGCGCGAGATC
AAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGTCATGTGGGGCAC
CGCCGATCGCCAGCGCCACCTGATGCAGACAAGCTGTTCAAGTGTGCCTG
CGAGAAATGTGTGTATGTCACCGAGATGGACACCAACTACAGCGCTATTA
AGTGCGAGATCACCAGTGCGGCTGATTGATGCTGCCCACCAAGGCGACGA
TTGCACTGCCGTTGGCGCTGTGCGATTGCTCAAGCAGGTCGGAATCACTA
TGTGACGCATTTGGAACGGGCCTGCAAAGAACATCGAGCATGAAAAATTC
CCTGAATTGGATTAAAATACCTCAAGACTTACAACAGTGGCCTTGCCGCC
ATATGAATTGCCATGATGAAATAGTCTGGCTCTTTCACGTCTGCCAGACT
CAAAAGAGCCTATGTGGTATATGCGGCGAGGA
FMO02239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8503-RA | 1774 | CG8503-RA | 160..1315 | 8..1151 | 4990 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14244126..14244581 | 139..594 | 2265 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14244842..14245247 | 593..996 | 1825 | 97.8 | Plus |
| 2R | 25286936 | 2R | 14243937..14244069 | 8..140 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:06 has no hits.
FMO02239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:39 Download gff for
FMO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 247..1241 | 1..996 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:22 Download gff for
FMO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 156..1150 | 1..996 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:05 Download gff for
FMO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 156..1150 | 1..996 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:05 Download gff for
FMO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14244842..14245247 | 593..996 | 97 | == | Plus |
| 2R | 14244128..14244579 | 141..592 | 99 | -> | Plus |
| 2R | 14243933..14244069 | 1..140 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:22 Download gff for
FMO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10131438..10131574 | 1..140 | 97 | -> | Plus |
| arm_2R | 10131633..10132084 | 141..592 | 99 | -> | Plus |
| arm_2R | 10132347..10132752 | 593..996 | 97 | == | Plus |
