FMO02240.5prime Sequence
1205 bp (1037 high quality bases) assembled on 2008-05-06
> FMO02240.5prime
CAGTCGACATGCTCGCTCTACGGATAGGTTTTTTGTTACTAACTCTGCCA
GCTTCTATGCAAGCTGCCAGGATATTGGCTATATTTCCGTTTCCGGGGCC
ATCACAGTATATTAATGTGGTACCTTATTTAAAGGAACTGGCTAATCGGG
GTCACCAGGTGACCTCGGTTAATGCGTTTCCGCAAAAGAAACCAGTGGTT
AACTTCAGAGATGTGTTTATCCCAGATGTATTTAACAATTATAAGGAATT
GATAAACGAACTGAGCGGACCAATGAATTTGTGGCAAGAGAACAACTTCA
TCAATAAATTCTTTGTAAGCGTTACACGCTGTGTTCTTACCAACAAAGAG
GTTACAGAAACCCTTTTGCCACCGGGAAAGGATCATTTCGATCTTATAAT
TGTAGAGGCTCTACGCTCGGATGCCTACTATGGATTCGCGGCCCACTTCA
ATGCACCTATAATTGGCATATCCACCTTTGGAACTGATTGGAATATTGAT
GCGCTAGTGGGCAATGAATCTCCTCTATCGTATACTCCGCTAGCAACGGG
GGGTCTTACGGATCGAATGACTTTCTTGGAGCGTCTGTCCAACTTTGTGG
ATACTACGGTTGCCTGGCTTAACTACAGATTTGTTCATATGTCAGAGCAG
GAGAAAATGTATGCGAAATACTTTCCCGAGGCCTCGAAAAGGGTTCAACT
CACCGATTTGAATAGAAACTTCTCGCTAGTATTGCTGAATCAGCACTTTT
CGTTGAGCTTCCCGCGTCCGTACGTTCCGAACATGATCGAGGTTGGAGGT
CTGCACATATCCCACAAGCCGGCTCCTCTGCCCAAGGACTTGGAAGAGTT
TATTCAAGGTTCCGGAGAGCACGGTGTGATATACTTTTCACTGGGCTCTA
ATGTTCTCAGTAAGGATCTACCGGCAGATAGGAAAGATCTTATCCTAAAA
ACCTTCGCCAGCTTGCCGCAGCGAGTGCCTCTGGAAATTCGAGACGACAG
TTGCCTGCAACGTCCATGTTTTTATCAGCAATGATTCCTTCGCGATATCC
TGTCATCCCAAGTCAAGCTCTTTATCCCCCACGCGGATGTTGAACCATCG
AAGACATTCATCATGCACCGCCTGGATCTGCCCTTCTTTACGATCATCTG
AGTAGGCGGCACGACAGGCGGATTTGGAAGTTGAACTCCTGATATCTCCC
GCAAC
FMO02240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt35b-RA | 1672 | CG6649-RA | 37..1196 | 9..1146 | 5115 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11169155..11169914 | 993..233 | 3695 | 99.3 | Minus |
| 3R | 32079331 | 3R | 11169973..11170210 | 246..9 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:31 has no hits.
FMO02240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:41 Download gff for
FMO02240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6649-RA | 21..1183 | 6..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:17 Download gff for
FMO02240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt35b-RA | 34..1196 | 6..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:18 Download gff for
FMO02240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt35b-RA | 34..1196 | 6..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:18 Download gff for
FMO02240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11168979..11169900 | 247..1146 | 96 | <- | Minus |
| 3R | 11169973..11170213 | 6..246 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:17 Download gff for
FMO02240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6994701..6995622 | 247..1146 | 96 | <- | Minus |
| arm_3R | 6995695..6995935 | 6..246 | 99 | | Minus |
