FMO02241.5prime Sequence
1203 bp (1032 high quality bases) assembled on 2008-05-06
> FMO02241.5prime
CAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCACCAAGATG
GAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTGGCTAAGGA
GCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGAGATGATGC
TACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTTCTTGCTCA
CGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCCAACTGGAA
CGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTCCCAGCTGA
AGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACGTGGACAAG
ACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTTCGCTCGGT
TACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCTTACTAAGA
TTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAGCTGCCACT
GTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGATAAGCGCGA
GAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTTGAAGGAGG
ATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAAAGTTCTTT
GACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTATCTAATGAT
TCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCATTATCAGG
CCATAGCGGAGCCTCCGCGCAAGAGACTGGCCTTACACCCGTAGACTCTG
CCGCGTCCACGGATGAGCAAAAAAGAGGATGACGATAAGAAAAGAAGGAG
GAAGATGACAGGATAAGAAGGCAGAGGTTGCTACAGAGGCTGAGGTCGAA
ATTGACTTACCGAGGAGCAGAGAAGGAACTGACGGAAAGCTGGTTTGTGC
CGTGCTTTATGCGTTTAGCTCCTTCGACAACGAACAGAGCGACATGATGG
CACATCTTCGAAGACAAGAGCTGGAGGAGTGCCGCTATAGAAATCTGCGC
TTGTCCATGTCAAGACCTGATCACTTCGACCCATTAATCAACTTTGGCTC
GGTTGCTGAACGAATGTCAGATAGCCAGCTGCAGAGGTATCCGACTAGGA
TCGCTCTGTATGGACATTACATCTCGCCATCACTGTCGCATGAATATTCA
TTC
FMO02241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1355 | 9..1110 | 4890 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790786 | 9..1008 | 4510 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:03 has no hits.
FMO02241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:42 Download gff for
FMO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1100-RA | 225..1328 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:17 Download gff for
FMO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1324 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:19 Download gff for
FMO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1324 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:19 Download gff for
FMO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5789772..5790824 | 1..1039 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:17 Download gff for
FMO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615494..1616546 | 1..1039 | 97 | -> | Plus |
