FMO02242.5prime Sequence
1207 bp (985 high quality bases) assembled on 2008-05-06
> FMO02242.5prime
CAGTCGACATGGCCACCCTCCTCAGCAACGGACAGCAGTCGGTAATGGCC
AGCACCAGTAATGGTCAGGAGCAGCAACGGCACCAGGACGAACCGGAGCA
GCAGCAGCAGGTCGAGATCAGAAAGTCGAGCTCACCGAAACCAGGCGCCA
TGCCCAGCTTGAAGCTGAACAGAATGGGTTCGGTGTCACCGAAAGATAAA
CGAGTCTACAAAATCGTCCTCACTGGCGGGCCTTGCGGCGGAAAGACGAC
GGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTAT
TCCGCGTGCCTGAAACGGCCACTGTTTTACTCAGTGGCGGTGTGAAGTTC
TCCGATCTGACCGAGAAAGAGGCCTACAAGTTCCAGGAGAATCTGATCCG
CACCATGGTTCAAATTGAGAACACCTACTTTGAGCTGGGCAACTCCAGCA
ATCGCAACTGTCTGATAATCTGCGATCGCGGCGTTATGGATGCCAGTGCA
TACATATCCAAGGATAAATGGGAAAAGATGATGGCGGGCAATAATTGGAA
TCCCGTGGAGATGCGCGACAATCGTTACAACCAAATCCTGCACTTGGTTT
CGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGACCATGCCTGT
CGCTCGGAGGGCGTTGATTTGGCCCGGGAACTGGACTACAAATCCGCCGC
CGCCTGGGTTGGCCATCCCTACTTCGATGTGATCGACAACTCCACCAACT
TCGAGACCAAGATGAATCGCATGATTGAGTCGGTGTGCCAGAAATTGGGC
ATTGATATTGGCGACCGTTTGCAGCCACGTCGCGCAAGCTGAAATATTTG
GTGGCCCTTTTGCCGCCGGACAGCGAGTTTCCGCTCTTCCAGGATTTCGA
TGTCGTACATCATTATCTGCAGTCCGCCGGACCCAAGTGCATGCCTCGCC
TTCGCAAGCGTGACAGAAGACACTGGAGCTACATCCACACCGCAGCGGCG
TCAATCGTTCACGGCAGCCCGCATTGAGGTGAGACCCAGCTGACCATCTG
ACAACTGAACTGCTGTCCAGCGCGACATGCTCCTTACCATCTACAAGGAC
CGCCCCTGCTTCTTAACAACATCAATTTCAGCTGTAATTAAAGACAGGCA
CCAACCTGCAGATTGGGCTTGGGAACGGTCTCGTCACTTCTCCGGCGAGT
CCTCGTT
FMO02242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30118-RB | 2030 | CG30118-RB | 519..1650 | 6..1121 | 5045 | 97.4 | Plus |
| CG30118-RA | 2317 | CG30118-RA | 519..1650 | 6..1121 | 5045 | 97.4 | Plus |
| CG30118-RC | 2584 | CG30118-RC | 1017..1782 | 372..1121 | 3215 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18439734..18439957 | 229..6 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 18431809..18432024 | 851..637 | 1030 | 99.5 | Minus |
| 2R | 25286936 | 2R | 18432444..18432586 | 639..497 | 700 | 99.3 | Minus |
| 2R | 25286936 | 2R | 18432647..18432776 | 501..372 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 18431548..18431747 | 1044..851 | 525 | 91 | Minus |
| 2R | 25286936 | 2R | 18438206..18438276 | 298..228 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 18437575..18437614 | 372..333 | 200 | 100 | Minus |
| 2R | 25286936 | 2R | 18437940..18437979 | 334..295 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6807 | 23..109 | 135 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6819 | 50..109 | 135 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2862 | 15..117 | 134 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6858 | 23..109 | 133 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2363 | 29..110 | 132 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2460 | 23..148 | 127 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6877 | 50..144 | 126 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1146 | 23..109 | 125 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2825 | 49..110 | 118 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6765 | 66..109 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2360 | 23..110 | 111 | 63.3 | Plus |
FMO02242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:44 Download gff for
FMO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30118-RA | 521..1656 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:59 Download gff for
FMO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30118-RA | 515..1650 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:24 Download gff for
FMO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30118-RA | 515..1650 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:24 Download gff for
FMO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18431809..18432022 | 639..851 | 99 | <- | Minus |
| 2R | 18432445..18432581 | 502..638 | 100 | <- | Minus |
| 2R | 18432647..18432775 | 373..501 | 100 | <- | Minus |
| 2R | 18437575..18437612 | 335..372 | 100 | <- | Minus |
| 2R | 18437940..18437977 | 297..334 | 100 | <- | Minus |
| 2R | 18438208..18438275 | 229..296 | 100 | <- | Minus |
| 2R | 18439735..18439961 | 1..228 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:59 Download gff for
FMO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14319314..14319527 | 639..851 | 99 | <- | Minus |
| arm_2R | 14319950..14320086 | 502..638 | 100 | <- | Minus |
| arm_2R | 14320152..14320280 | 373..501 | 100 | <- | Minus |
| arm_2R | 14325080..14325117 | 335..372 | 100 | <- | Minus |
| arm_2R | 14325445..14325482 | 297..334 | 100 | <- | Minus |
| arm_2R | 14325713..14325780 | 229..296 | 100 | <- | Minus |
| arm_2R | 14327240..14327466 | 1..228 | 98 | | Minus |
