FMO02244.5prime Sequence
889 bp (889 high quality bases) assembled on 2008-05-06
> FMO02244.5prime
CAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGTTGTACAAC
TTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATGGAGGGCTA
CGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTACGACGTGG
TCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGAAAATATTG
GCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACGGCTAAGAA
CAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGATCATAGATC
CCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACGTTTGCGTT
TCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTAATCAACAA
TCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGGCGCCTTTT
GCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTAAGGATGCC
AATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTGGCCAACAA
GCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACGACTTGTTG
CCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTGGCAATCTG
GATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCCGCCGGCTC
CCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTTTGGCGGAC
CATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAGAGAAGTTG
CGCAAGGAGATCGAAGACCTTCTGCGTAAGGAGACCAGGAGGAGTCCGTG
GGAGGGAAGCCGGTGCAGAACGCAAGCTTTCTAGACCAT
FMO02244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17027-RB | 1558 | CG17027-RB | 271..1133 | 9..870 | 4290 | 99.9 | Plus |
| CG17027-RA | 1362 | CG17027-RA | 75..937 | 9..870 | 4290 | 99.9 | Plus |
| CG17026-RA | 1004 | CG17026-RA | 232..877 | 150..795 | 1085 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15980370..15980953 | 9..592 | 2920 | 100 | Plus |
| 3L | 28110227 | 3L | 15981184..15981463 | 592..870 | 1350 | 99.6 | Plus |
| 3L | 28110227 | 3L | 15975599..15976039 | 150..590 | 735 | 77.8 | Plus |
| 3L | 28110227 | 3L | 15976117..15976301 | 611..795 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:05 has no hits.
FMO02244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:46 Download gff for
FMO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17027-RA | 408..1284 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:59 Download gff for
FMO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17027-RA | 68..944 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:40 Download gff for
FMO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17027-RA | 68..944 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:40 Download gff for
FMO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15980363..15980953 | 1..592 | 99 | -> | Plus |
| 3L | 15981185..15981470 | 593..880 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:59 Download gff for
FMO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15973463..15974053 | 1..592 | 99 | -> | Plus |
| arm_3L | 15974285..15974570 | 593..880 | 98 | | Plus |
