FMO02245.5prime Sequence
1209 bp (1036 high quality bases) assembled on 2008-05-06
> FMO02245.5prime
CAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTCTGCTGGTA
GTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCGAAGACGGG
ACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAACGCCAAAA
AGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATGTGAAGAGT
GCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTGGCTCCATC
GAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGCCATCGTGG
CCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCTTCTTTGCT
ATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTGCGCCTGAA
CACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCCAAAGGGAG
CTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATTCTATTGCG
AAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTCCGTCCACC
AAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCTGGTGGGAA
GTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACAACAAGAAT
CTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATCTCGGGTCA
AATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTCGCAAAATG
GTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGGTGGTGGAG
ACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGCATGATTCT
GCTGATTGAATCGGGAACACCAAAGGCTCACAACAAGAACAGGATAATGG
CGATGACTGGTTTGGTGCTCCTCACCGTGTTCTTCTCTTCCTGTTGTCCG
TTTTTCGTCGAAGCGCAAGATTATCCCTATAGTTTCTTGTCAAAGCAAGC
TTTCTAGACATTCGTTTGGCGCGGCGGGCCCAGGTAAGTGTCATAATCAT
AATCATATTCATATCATAATCACACTAGCTAGAGATCTGGTCCTGACCTA
TGCTTGATTCTCACCAATAAAAACGCCGGCGTAACGAACGTCTGACCATT
CGATGGAATCTGAGGTCCATAACTGGAATCTATACACAGAGGGAAGTCCA
GAGCGGAAG
FMO02245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ostgamma-RA | 1245 | CG7830-RA | 124..1108 | 9..990 | 4820 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8307147..8307875 | 822..94 | 3645 | 100 | Minus |
| 2L | 23513712 | 2L | 8306932..8307068 | 958..823 | 635 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8307983..8308069 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:20 has no hits.
FMO02245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:48 Download gff for
FMO02245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7830-RA | 113..1109 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:25 Download gff for
FMO02245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ostgamma-RA | 117..1113 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:30 Download gff for
FMO02245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ostgamma-RA | 117..1113 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:30 Download gff for
FMO02245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8306906..8307068 | 823..982 | 96 | <- | Minus |
| 2L | 8307147..8307873 | 96..822 | 100 | <- | Minus |
| 2L | 8307983..8308073 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:25 Download gff for
FMO02245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8306906..8307068 | 823..982 | 96 | <- | Minus |
| arm_2L | 8307147..8307873 | 96..822 | 100 | <- | Minus |
| arm_2L | 8307983..8308073 | 1..95 | 95 | | Minus |
