FMO02246.5prime Sequence
1213 bp (1027 high quality bases) assembled on 2008-05-06
> FMO02246.5prime
CAGTCGACATGCTCATCCGCCTGCGCTATGGAAGACGCCTGCAGACCTAT
CTGAAGATAGGCGCCTGTGTCCTGGTCGGCCTGTGCTACTTCGCCTTCCT
TTTCCGCGAATCCCTCAATGCATACGAGCACCGGGAGCGGGCTACGGCCG
CGGAATTGGAGGCGGAATCGGAGCCATCAAAGCAGCAGCTCAAGCTAAAG
CGGCAGCAGTTGCAGCGCCAGCGGATATTGGCCAAGCAGCAGGAGCAGGG
AAAGGGCATCGCTGGGGGAAATGCCAGTGCAGGCAGCTCATCCTCCCAAG
CAGCAGCTCCTCCGCCGCCGCCGCCGGCTACCACCCTGAATCCCGTGTAT
GAGTACTCCGAGGAGCTGCACAGTCGCACGGAGCGGGAGCTGCAGAGGAG
GAGCGAGCATCTGGCCGCCGTCTGCGATCGGTATAAGCTGCAGGAAAAGT
ACCCACCGAATCCCTGGGAGTTCTTCGTCTCGCCTGGCCACAACAATCTC
GTCTGGTGCAACGTCTTCAAGGCGGCCAGCAGTACGTGGATGTATTACTT
TAATATATTAGCTGGCTACGATGTGAAGTATCTGCAGCGCACGGAGACGC
AGCCACTGGAGCTGGCCAGAAAGCGTTTTCCACGCCCGGAACTGGGCGAA
CTGATGGAGCTGCTGCCCAGTGCGCTGTCCTTTCTCTTTGTGCGCGATCC
CTTCGAGCGAATCCTGAGCGCCTATCGCAACAAACTGGAGGGCAACAAGA
ACACCTTCTACAAGGCGCTGGGCAACAAGATCGTGCATCGCTACAGGAAG
CGTAATCTGGGCGGACCCTGGCCGCGATGTGGACCCACCTTCGAGGAGTT
CGTCCGCTTCCTGATCGCCGAGCATGCGGCGGGCAGAGATTCGACGAGCA
CTGGGCACCAGTTTACAGCTTCTGCACGCCCTGCAGCGTTAACTTCACCA
TCATCGGCAAGACGGAGACGTTCCAGAGGACTCGGAGTTCATCATACGGC
AGCGGTCTGATCGCTGCTCCTGGGACTGGTCAGCTGCCGCAGCGAGCAGG
CAAATTGCACCAGGCGCGAAGTGGCGTTAAATCGAGCCTGTCAGGATACT
TCGCCGATTCCGAACGTTCCGTGAACATTTTCAGAATATCGATCGATTCA
GGCCTTTTGACATACGACATTGCGAGATACTACAGAAATGTGGTCACTTC
TCGGTGGATAGTT
FMO02246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14024-RB | 2616 | CG14024-RB | 283..1401 | 9..1108 | 5120 | 98.1 | Plus |
| CG14024-RA | 1798 | CG14024-RA | 283..1401 | 9..1108 | 5120 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5313386..5313884 | 507..9 | 2495 | 100 | Minus |
| 2L | 23513712 | 2L | 5312602..5313093 | 1044..560 | 2135 | 98 | Minus |
| 2L | 23513712 | 2L | 5313269..5313325 | 561..505 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:28 has no hits.
FMO02246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:34 Download gff for
FMO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 267..1402 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:44 Download gff for
FMO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 271..1406 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:20 Download gff for
FMO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 277..1412 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:20 Download gff for
FMO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5312515..5313091 | 562..1119 | 95 | <- | Minus |
| 2L | 5313269..5313324 | 506..561 | 100 | <- | Minus |
| 2L | 5313388..5313890 | 1..505 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:44 Download gff for
FMO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5312515..5313091 | 562..1119 | 95 | <- | Minus |
| arm_2L | 5313269..5313324 | 506..561 | 100 | <- | Minus |
| arm_2L | 5313388..5313890 | 1..505 | 99 | | Minus |
