FMO02248.5prime Sequence
1211 bp (1001 high quality bases) assembled on 2008-05-06
> FMO02248.5prime
CAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTTGCGTAATA
GGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTGGAAGCGGG
TCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGGAACATGGA
TTTTCTCCGAGGAAATGCCCTCGGACGAGTACGACGAGGTGCACAGCAGC
ATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATGGGCTATCC
GGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCACCTCCAACC
AGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGCTAAAGGCC
CACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGCTTGGACGA
CTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGACCCAGTCT
ACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAACCGGACCTC
CCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATGCACAGCCA
CCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCTGATCATTG
GCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCTTGGCTGCC
AAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAACACAGCATT
CATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCACAAAGGATG
GAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACGTGATGTTC
TGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGATGTGGGTGT
CCAGGTGATAGACACTTCGTGCAGCCACTGTGGAAGCACTGCATCAACAT
CAACCACCCGACCATGGTCTTTGTGGGCCTGCCCTTCAACGTGATTCCCA
CCCACATCTTCGACATGCAGTGCGCTTCACGCTGAAGTCTTCACAGGTCA
GCGGAGTTCCTCCGGGGCAGAATGATTGCCGATCTGAACAGGAAATCGAA
GCGGTGGGGCTGCGGCGTGCGCCAACGAGAAAGCCCATCGAATGGGCGAG
CGTACGGTTTGTCTACTCAATGACTGCCAGTATCGCGGATTGAACTCAGC
CGTATCTAGCCTAAGTGAGAGACTTGCGCGCAGAAATCATTTTTGGAGTG
CAACTGATATC
FMO02248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmo-2-RA | 1663 | CG3174-RA | 88..1231 | 9..1138 | 5125 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6643113..6643547 | 1005..574 | 1995 | 98.9 | Minus |
| 2R | 25286936 | 2R | 6644492..6644684 | 409..217 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 6644212..6644385 | 579..406 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 6644742..6644906 | 217..53 | 795 | 98.8 | Minus |
| 2R | 25286936 | 2R | 6644966..6645011 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:49 has no hits.
FMO02248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:36 Download gff for
FMO02248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3174-RA | 70..1220 | 9..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:23 Download gff for
FMO02248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmo-2-RA | 88..1238 | 9..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:17 Download gff for
FMO02248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmo-2-RA | 88..1238 | 9..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:17 Download gff for
FMO02248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6644494..6644683 | 218..407 | 100 | <- | Minus |
| 2R | 6644742..6644904 | 55..217 | 98 | <- | Minus |
| 2R | 6644966..6645011 | 9..54 | 100 | | Minus |
| 2R | 6643014..6643541 | 580..1095 | 95 | <- | Minus |
| 2R | 6644212..6644383 | 408..579 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:23 Download gff for
FMO02248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2530519..2531046 | 580..1095 | 95 | <- | Minus |
| arm_2R | 2531717..2531888 | 408..579 | 100 | <- | Minus |
| arm_2R | 2531999..2532188 | 218..407 | 100 | <- | Minus |
| arm_2R | 2532247..2532409 | 55..217 | 98 | <- | Minus |
| arm_2R | 2532471..2532516 | 9..54 | 100 | | Minus |
