FMO02252.5prime Sequence
1045 bp (991 high quality bases) assembled on 2008-05-06
> FMO02252.5prime
CAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCATGGCCATG
GCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTGTTGGTTCC
GCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTCGGCTTTAA
GTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAGCTAGTGTC
AAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTGCGAAGAGC
GGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACTGGCATCTC
GATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTGCAGCGGCC
GTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGTGTGGTGCG
AATCACACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTGCGATCAGA
AGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATGATGGCAGT
GAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTCGGGCCACT
AACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGATTACGAGCA
GTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGCAGGAGCTG
AGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCGGAACAGTA
TCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGATGCATTGC
GTGACCACACGGGAAAGAATTCAGTACCCACGATAGGGTTAATGATGAAA
ATGAGCAAACTGCGCGGCTCAGCAGTCGGGAGCTTTTTTGGTATGGCGGC
TCTTGCATCTCACCAACCCATTTGGGCTTATATCAACGCCTTCTAGACGG
GATGTTGATGGTTTCAAGGGCATTCTATGGCGCGGATTTCTTACATGGAC
CCAAAGGTTCCCTGAAAATAGTCGCATGATGGTTCGTCACGCGCTGCTTT
AGCAGCTTTCAGACCATTCGTTTGGCGCGCGTGACCAGGTAATGA
FMO02252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-RC | 1223 | CG1889-RC | 110..1105 | 9..1001 | 4710 | 98.7 | Plus |
| CG1889-RA | 1468 | CG1889-RA | 110..1105 | 9..1001 | 4710 | 98.7 | Plus |
| CG1889-RE | 1227 | CG1889-RE | 110..1109 | 9..1001 | 4660 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9965837..9966390 | 305..857 | 2610 | 99.3 | Plus |
| X | 23542271 | X | 9965585..9965770 | 119..304 | 930 | 100 | Plus |
| X | 23542271 | X | 9965350..9965460 | 9..119 | 555 | 100 | Plus |
| X | 23542271 | X | 9966458..9966596 | 864..1001 | 410 | 94.3 | Plus |
Blast to na_te.dros performed 2014-11-28 19:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 475..425 | 111 | 68.6 | Minus |
FMO02252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:56 Download gff for
FMO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RC | 110..1105 | 9..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:42 Download gff for
FMO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RA | 110..1105 | 9..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:17 Download gff for
FMO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RA | 110..1105 | 9..1001 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:17 Download gff for
FMO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9965350..9965460 | 9..119 | 100 | -> | Plus |
| X | 9965586..9965770 | 120..304 | 100 | -> | Plus |
| X | 9965837..9966397 | 305..863 | 99 | -> | Plus |
| X | 9966458..9966596 | 864..1001 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:42 Download gff for
FMO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9859383..9859493 | 9..119 | 100 | -> | Plus |
| arm_X | 9859619..9859803 | 120..304 | 100 | -> | Plus |
| arm_X | 9859870..9860430 | 305..863 | 99 | -> | Plus |
| arm_X | 9860491..9860629 | 864..1001 | 94 | | Plus |
