FMO02254.5prime Sequence
1105 bp (1046 high quality bases) assembled on 2008-05-06
> FMO02254.5prime
CAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCAGTCGATTG
GCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCCCAGCACTC
AATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCCCACGCAAT
TTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGTACTCGCAG
CCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAACTCGCTGCT
CCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAAC
AGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGCAGCAACTC
CTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCAGGAGTGGG
CGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCAGATGCACG
CCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGCAGCAGCAG
CAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTATCCGGCGG
CCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCAGATAGCTG
CTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCACAGAACGCA
GCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAATGGCCTGCA
GCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCCAGTAAGAG
GAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAGCGCCTTTG
CGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTACTCCACGCA
ACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGACGTGCTCCGTGACCA
GCAGCAGTCGGTGGCTCATCAGTTCGCCACCAGCCAGTTGGCGCCCACCA
CCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGTGCTGGGATCC
CCCACCTACCAGCATTCGCGGACGTTCTCTCATGTGAGCTCTCAAGCGCA
ATCTCACTACAGCTCGCAAGCTTTCTAGAACATCGTTGGCCGCGGGCCCA
GGTAT
FMO02254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RC | 1382 | CG32548-RC | 173..1233 | 8..1064 | 5130 | 99.2 | Plus |
| CG32548-RB | 1475 | CG32548-RB | 393..1326 | 135..1064 | 4495 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18435895..18436801 | 1040..135 | 4380 | 99.1 | Minus |
| X | 23542271 | X | 18437002..18437128 | 134..8 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:16 has no hits.
FMO02254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:58 Download gff for
FMO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1233 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:08 Download gff for
FMO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1233 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:27 Download gff for
FMO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1233 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:27 Download gff for
FMO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18435868..18436801 | 135..1064 | 99 | <- | Minus |
| X | 18437002..18437136 | 1..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:08 Download gff for
FMO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18329901..18330834 | 135..1064 | 99 | <- | Minus |
| arm_X | 18331035..18331169 | 1..134 | 97 | | Minus |
