FMO02255.5prime Sequence
764 bp (764 high quality bases) assembled on 2008-05-06
> FMO02255.5prime
CAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGTCCCGTGGT
GCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAAGGTCACGG
TCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCGTTTGATTC
TGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTATGAAAGAG
GCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGACATCAACCA
AGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCGCACCAAGA
AGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCTACCAGGAC
GGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGTCAGCAGCT
GGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCTCGTGGAGC
TGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGATCAAGATC
ACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCCCGAATCGA
TAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGAGCGTGAGG
AGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGGCACGCATC
AAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATCGATGTGCG
CCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCTGTTCGCAA
GCTTTCTAGACCAT
FMO02255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha36-1-RA | 1064 | CG8186-RA | 103..840 | 9..746 | 3690 | 100 | Plus |
| Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 36..648 | 1430 | 82.2 | Plus |
| Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 36..648 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15541537..15542274 | 9..746 | 3690 | 100 | Plus |
| X | 23542271 | X | 2579579..2579942 | 529..166 | 860 | 82.4 | Minus |
| X | 23542271 | X | 2579996..2580112 | 167..51 | 285 | 82.9 | Minus |
| X | 23542271 | X | 2579399..2579516 | 648..531 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:30 has no hits.
FMO02255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:00 Download gff for
FMO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8186-RA | 114..867 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:17 Download gff for
FMO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-1-RA | 96..849 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:34 Download gff for
FMO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-1-RA | 96..849 | 1..758 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:34 Download gff for
FMO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15541530..15542283 | 1..758 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:17 Download gff for
FMO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11429035..11429788 | 1..758 | 98 | | Plus |
