FMO02256.5prime Sequence
1183 bp (1013 high quality bases) assembled on 2008-05-06
> FMO02256.5prime
CAGTCGACATGTATCCAATAACGTTTATATATCGTGTCAACAATGATAAG
GATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAACTAAAGGC
CACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGTAGCCGGAC
TCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCGATACCGTG
AAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTACAAAGGCAC
ATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCATAGGATTAT
ATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGAACGCCATC
GTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCAATGACCCCAATTC
GCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGCCCAGGGTT
TCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAATTGTCCACG
CAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGCCTCAAGTA
CATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATTAACAGCCA
CCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGTCCTTCGAG
TACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACTCTAATGGC
CGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCCCATCGACG
TGGTGAAGACCCACATGCAGCCGATGCCCTGGGCGCGAATGCCAAATACA
ATGGCTTCATCGACTGTGCCATGAAGGCTTTAGGAACGAGGGACCGCAGT
ACTTCTTTCGCGGTCTAAACTCCACCTTGATCCGGGCTTTTCCGATGAAC
GCCGCCTGCTTCTTTGTGTGTCCTGGTACTGACATCTGCAATGCCAGGGC
GGCATGGATTCGTAATGCATTCCGATCAGCACTGACTCTTCGTCAACTAG
ACAACAGAGCAGCGACTTGAGCGACGGCGCACGATGAGATGTGCCAAATA
TCACGGACATGCCATGTCCATCAGTATGTGTCCACGCCAAGAATGTCTCC
AGGCATACCGAGTACCAATCCAATTCAGACCAAGACGTTAGCTCGAATGT
ATTAAGCAAGCTTTCTTAACATCTTTTGCCACA
FMO02256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-RB | 1431 | CG4995-RB | 207..1314 | 9..1090 | 4860 | 97.4 | Plus |
| CG4995-RA | 1417 | CG4995-RA | 193..1300 | 9..1090 | 4860 | 97.4 | Plus |
| CG4995-RD | 1246 | CG4995-RD | 64..1129 | 51..1090 | 4650 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10323847..10324310 | 159..622 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 10324375..10324744 | 618..980 | 1500 | 98.1 | Plus |
| 2L | 23513712 | 2L | 10323669..10323780 | 49..160 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 10322793..10322835 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:49 has no hits.
FMO02256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:02 Download gff for
FMO02256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 186..1171 | 1..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:15 Download gff for
FMO02256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 186..1171 | 1..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:31 Download gff for
FMO02256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 186..1171 | 1..980 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:31 Download gff for
FMO02256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10323671..10323779 | 51..159 | 100 | -> | Plus |
| 2L | 10322786..10322834 | 1..50 | 92 | -> | Plus |
| 2L | 10323848..10324309 | 160..621 | 100 | -> | Plus |
| 2L | 10324379..10324744 | 622..980 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:15 Download gff for
FMO02256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10322786..10322834 | 1..50 | 92 | -> | Plus |
| arm_2L | 10323671..10323779 | 51..159 | 100 | -> | Plus |
| arm_2L | 10323848..10324309 | 160..621 | 100 | -> | Plus |
| arm_2L | 10324379..10324744 | 622..980 | 98 | == | Plus |
