FMO02258.5prime Sequence
1182 bp (996 high quality bases) assembled on 2008-05-06
> FMO02258.5prime
CAGTCGACATGACAACGACCACATCACCTAGAGAAACCACACAGACCACA
TTTACGGTTCGCAAGATGACGGGCCGGCGAATGTCAAAGCTATCCACAGT
CCTGCTGTTCTGCGCCGCCTTGCTGCTGACCAAGTCCTGCGGCATCCTGG
CGCTCAGCGGCGACGGTTTGCCCCAATCCCAGGATGTGGGCCAGGCGGAG
CTATGGAGCGATGATGCCACCACCACCATCATTTCGCCCAGCGAGGAGAA
CAGCGGTTCCGGTGGCTGGGAACTGACCACGGAGGCGGACACCACCATAC
CGAGTGAGGAAACTACTGCGGGCAATGAGGAAACCACCGTTTCCGAAGAG
GAGACCTCCACGGACGCCTCTGGAGATGTAGAGACCACCACTGCTGCGCC
GGAAACTTCACCAGCTGACCAGGAGAGCTCTTCCGCTCCCGAAGAGACCA
CTTCCGCTCCCGAAGAGACCACTTCCGCTCCCGAAGAGACCACTTCCGCT
CCCGAGGAGAGCTCTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCCGAGGA
GACCACTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCCGAAGAGAGCTCTT
CCGCTCCCGAGGAGACCACTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCA
GACCAGACATCATCAGCTCCCAACGAAAGCTCTGCTCCTCCAGAGGAAAC
CTCATCAGCGCCCGAGCAGACATCTTCCGCTCCCGAAGAAACCTCCTCCG
CTCCTGCAGAGCCAGAGAGTTCTAGCACTTCCTCTGCAGCCAGTCCTTCC
ACGCCGGCAGGTACCACCATTGCACCCACCCCGCCCACTTTCAAATGCCA
GACGGCAGGACTGTTTCCACACATCAGTGGCGATTGCAGCCGTTACCACA
ACTGTCTCTTGAATCCTGTGCTGCGACAGCTGCAGACATTGAGCTCACGT
GCCCGGACTGACCGTCTTCTCGCCGAGCCTGGCAGATGCTGAGGACTGCC
GATGCCAGTGAGAGCTCCGTGCTGTCGTGGCAGATTGGCGATGATGAACC
TACTACTACAGCTGCTACAGTGCAGGCGCTTCCCAGTCATTGTGGCCGCT
CATACCAGTCCAGAGTCCTGATGAGATCTGCTGAACTGAAGCGATTGCCG
GACGGAGCACCCGAAATCCCGACACCTGTCGT
FMO02258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mur18B-RA | 1615 | CG7874-RA | 40..1116 | 9..1065 | 4910 | 98.1 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..702 | 465..713 | 735 | 86.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 496..744 | 423..671 | 735 | 86.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..713 | 486..745 | 730 | 85.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 517..776 | 423..682 | 730 | 85.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..680 | 505..733 | 635 | 85.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 536..764 | 421..649 | 635 | 85.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..680 | 526..754 | 620 | 84.7 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 557..785 | 421..649 | 620 | 84.7 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..659 | 547..754 | 485 | 82.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 578..785 | 421..628 | 485 | 82.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..638 | 568..754 | 470 | 83.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 599..785 | 421..607 | 470 | 83.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..624 | 591..761 | 375 | 81.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 622..792 | 423..593 | 375 | 81.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..596 | 610..754 | 230 | 77.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 641..785 | 421..565 | 230 | 77.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..575 | 631..754 | 185 | 76.6 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 662..785 | 421..544 | 185 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19213476..19214338 | 122..982 | 4215 | 99.8 | Plus |
| X | 23542271 | X | 19213777..19214025 | 465..713 | 735 | 86.3 | Plus |
| X | 23542271 | X | 19213819..19214067 | 423..671 | 735 | 86.3 | Plus |
| X | 23542271 | X | 19213777..19214036 | 486..745 | 730 | 85.4 | Plus |
| X | 23542271 | X | 19213840..19214099 | 423..682 | 730 | 85.4 | Plus |
| X | 23542271 | X | 19213775..19214003 | 505..733 | 635 | 85.2 | Plus |
| X | 23542271 | X | 19213859..19214087 | 421..649 | 635 | 85.2 | Plus |
| X | 23542271 | X | 19213775..19214003 | 526..754 | 620 | 84.7 | Plus |
| X | 23542271 | X | 19213880..19214108 | 421..649 | 620 | 84.7 | Plus |
| X | 23542271 | X | 19213293..19213406 | 9..122 | 570 | 100 | Plus |
| X | 23542271 | X | 19213775..19213982 | 547..754 | 485 | 82.2 | Plus |
| X | 23542271 | X | 19213901..19214108 | 421..628 | 485 | 82.2 | Plus |
| X | 23542271 | X | 19213775..19213961 | 568..754 | 470 | 83.4 | Plus |
| X | 23542271 | X | 19213922..19214108 | 421..607 | 470 | 83.4 | Plus |
| X | 23542271 | X | 19213777..19213947 | 591..761 | 375 | 81.3 | Plus |
| X | 23542271 | X | 19213945..19214115 | 423..593 | 375 | 81.3 | Plus |
| X | 23542271 | X | 19213964..19214108 | 421..565 | 230 | 77.2 | Plus |
| X | 23542271 | X | 19213775..19213919 | 610..754 | 230 | 77.2 | Plus |
| X | 23542271 | X | 19213775..19213898 | 631..754 | 185 | 76.6 | Plus |
| X | 23542271 | X | 19213985..19214108 | 421..544 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:52 has no hits.
FMO02258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:49 Download gff for
FMO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7874-RA | 28..1012 | 1..982 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:25 Download gff for
FMO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mur18B-RA | 31..1015 | 1..982 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:41 Download gff for
FMO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mur18B-RA | 31..1015 | 1..982 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:41 Download gff for
FMO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19213284..19213406 | 1..122 | 96 | -> | Plus |
| X | 19213477..19214338 | 123..982 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:25 Download gff for
FMO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19107317..19107439 | 1..122 | 96 | -> | Plus |
| arm_X | 19107510..19108371 | 123..982 | 99 | == | Plus |
