FMO02259.5prime Sequence
1216 bp (968 high quality bases) assembled on 2008-05-06
> FMO02259.5prime
CAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTCTGGCCCTC
ATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGACGAAAGTCA
GGAGGATCAAAAGACGGAGTTTAACCTGGCCTCCACTCTGACGGGAGGCA
TTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGCAACTTTAT
CCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACTGGATCCAT
CGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACGAGTGGCCA
GTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATCCGGCACTC
ACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTCC
TGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGAG
GATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCCT
GGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTCC
TCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACTG
GTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCCA
GCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAGC
TGTGGCTCACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCTGG
AGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGCTCCTGCCACCAGCGGCAT
GAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCATTGGG
ACCATCATTTCTCGATGAACACCGAGTACAAGAGGATGGCGTCCACATGG
ACCATTTGGAGTGCTGAACAATCACTATGCCTTTGGCTATGGCAGTGGAT
ATGGGGCGGATACACGGTGCCTTCACTCGCGGCCTACGCAAGCTTACAAG
ACCATTCGATTGGCGCGCGGGTCTAGGTAAGTGGTCATATCATAATCAAT
GATCATATCATATAGTCCACACTAGGCTAGGGAGATCCTGGGTCATGACT
ATGCCTGAATTCTCACAATAAGAACGACCCGGGCGCACGACGTCTGACAG
TCGATGGAATCTGAGTCCGTACTGGATCTTACACAAGGCGCGAACTCTCC
AAAGGCAGAAACCTCG
FMO02259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-RC | 2135 | CG7021-RC | 20..1014 | 8..994 | 4700 | 98.7 | Plus |
| Ela-RA | 1187 | CG7021-RA | 20..1014 | 8..994 | 4700 | 98.7 | Plus |
| Ela-RB | 1127 | CG7021-RB | 313..954 | 361..994 | 2950 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24865369..24865846 | 8..485 | 2375 | 99.8 | Plus |
| 3R | 32079331 | 3R | 24866010..24866509 | 482..975 | 2170 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:27 has no hits.
FMO02259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:01:50 Download gff for
FMO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7021-RA | 12..1013 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:05 Download gff for
FMO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 13..1014 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:50 Download gff for
FMO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 13..1014 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:50 Download gff for
FMO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24865362..24865844 | 1..483 | 99 | -> | Plus |
| 3R | 24866012..24866530 | 484..994 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:05 Download gff for
FMO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20691084..20691566 | 1..483 | 99 | -> | Plus |
| arm_3R | 20691734..20692252 | 484..994 | 97 | == | Plus |
