FMO02261.5prime Sequence
1190 bp (1025 high quality bases) assembled on 2008-05-06
> FMO02261.5prime
CAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCAAGGATGCG
ACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGCTCATTTTT
CTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAAGGCGATTC
ATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATGGAGCCTAC
AATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCGTTCCCACA
GACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGATTACGCCG
ATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGGGCACCAAG
ATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTGGCCGGCAG
ATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGAGGTGGGCA
TCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCATCGAACGG
GAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAGTCCTGTTG
CACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCAGCGTCCTC
TACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATCATCGCGGC
TTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTCTCGGAGAA
GCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAAGGCCATTG
AGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACGTGATCCAA
AAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTATTGCGGTCA
TGGCATTCACCGTGTTTTCCACACAGCTCCCAATGTGCCTCACTATGCCA
AAAACTCTGCCGTAGGAGTAATGGGCCCTGACCACTGCTTCACCATCGAG
CCCATGATTTCGTTGGCGTTCAGAAGCTGAAACCTGGCAGATGACTGGAC
TGCTGTGACGCGATGGCCTGTACTCGCCAGTTTGAGCAGACCCTGCTGTC
ACGAACCGGATGCAGATTCTCACCAGCGTCCGGAAAATCACGACAGTGCT
GTCATGCAGATGCAAGCCATCATGACATTCGTTGCGCTGTCAGGTAGTGC
TACCTAAATCATATTCAATAATCATACTCACCACACTATG
FMO02261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-RA | 1301 | CG13630-RA | 84..1167 | 9..1080 | 5045 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24718321..24719061 | 900..160 | 3705 | 100 | Minus |
| 3R | 32079331 | 3R | 24719128..24719281 | 162..9 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 24718108..24718275 | 1048..888 | 395 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:37 has no hits.
FMO02261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:09 Download gff for
FMO02261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 75..1174 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:32 Download gff for
FMO02261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 77..1176 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:32 Download gff for
FMO02261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 77..1176 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:32 Download gff for
FMO02261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24718321..24719058 | 163..900 | 100 | <- | Minus |
| 3R | 24719128..24719286 | 1..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:32 Download gff for
FMO02261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20544043..20544780 | 163..900 | 100 | <- | Minus |
| arm_3R | 20544850..20545008 | 1..162 | 97 | | Minus |
